View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_low_87 (Length: 207)

Name: NF19289_low_87
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_low_87
NF19289_low_87
[»] chr1 (23 HSPs)
chr1 (18-146)||(46134537-46134665)
chr1 (24-147)||(36271399-36271522)
chr1 (24-147)||(6766973-6767096)
chr1 (39-116)||(8560869-8560946)
chr1 (18-94)||(51987879-51987956)
chr1 (100-150)||(49420957-49421007)
chr1 (45-146)||(31787478-31787578)
chr1 (73-146)||(49420084-49420156)
chr1 (33-94)||(51988399-51988460)
chr1 (74-146)||(27418164-27418234)
chr1 (74-146)||(27420269-27420341)
chr1 (79-146)||(42383720-42383785)
chr1 (31-146)||(31788210-31788324)
chr1 (104-147)||(36385667-36385710)
chr1 (31-146)||(14924674-14924788)
chr1 (88-146)||(43317108-43317164)
chr1 (100-146)||(536738-536783)
chr1 (30-132)||(11469698-11469799)
chr1 (100-146)||(34716424-34716470)
chr1 (104-146)||(42646044-42646086)
chr1 (88-146)||(50950886-50950943)
chr1 (31-147)||(11469080-11469195)
chr1 (31-147)||(14925276-14925391)
[»] chr4 (12 HSPs)
chr4 (31-146)||(54006728-54006843)
chr4 (31-146)||(54008387-54008502)
chr4 (25-94)||(3847938-3848008)
chr4 (88-146)||(54453095-54453152)
chr4 (104-148)||(232055-232099)
chr4 (22-94)||(25371468-25371541)
chr4 (109-146)||(51412594-51412631)
chr4 (114-146)||(231436-231468)
chr4 (91-147)||(6247464-6247520)
chr4 (76-146)||(34155605-34155674)
chr4 (104-147)||(25970105-25970148)
chr4 (31-132)||(10421515-10421615)
[»] chr5 (19 HSPs)
chr5 (22-116)||(39167364-39167458)
chr5 (22-145)||(4789521-4789644)
chr5 (100-146)||(16689593-16689639)
chr5 (15-146)||(4820454-4820585)
chr5 (112-146)||(6803948-6803982)
chr5 (110-146)||(26711568-26711604)
chr5 (110-146)||(26981305-26981341)
chr5 (104-147)||(6007660-6007703)
chr5 (50-101)||(7087910-7087961)
chr5 (104-139)||(9142054-9142089)
chr5 (104-146)||(4301905-4301947)
chr5 (100-146)||(6804891-6804937)
chr5 (91-145)||(26712381-26712435)
chr5 (91-145)||(26982119-26982173)
chr5 (45-146)||(4554657-4554757)
chr5 (105-146)||(4555467-4555508)
chr5 (69-146)||(12202118-12202194)
chr5 (91-139)||(4555382-4555430)
chr5 (121-149)||(4744190-4744218)
[»] chr2 (13 HSPs)
chr2 (22-97)||(23463478-23463554)
chr2 (22-116)||(41042572-41042667)
chr2 (22-112)||(45139726-45139817)
chr2 (74-146)||(36390957-36391028)
chr2 (91-146)||(4975696-4975751)
chr2 (100-147)||(8164408-8164455)
chr2 (111-146)||(24383076-24383111)
chr2 (91-146)||(4993604-4993659)
chr2 (32-146)||(4976440-4976553)
chr2 (32-146)||(4994347-4994460)
chr2 (77-141)||(15602800-15602863)
chr2 (104-140)||(41519931-41519967)
chr2 (100-132)||(44154984-44155016)
[»] scaffold0136 (1 HSPs)
scaffold0136 (22-94)||(21459-21532)
[»] chr8 (11 HSPs)
chr8 (30-147)||(12349966-12350082)
chr8 (31-146)||(43924952-43925066)
chr8 (104-146)||(35943076-35943118)
chr8 (109-146)||(35839722-35839759)
chr8 (31-132)||(43924504-43924604)
chr8 (99-147)||(34364681-34364729)
chr8 (110-146)||(35840542-35840578)
chr8 (74-146)||(40450963-40451034)
chr8 (111-146)||(38660076-38660111)
chr8 (22-146)||(27321599-27321723)
chr8 (109-146)||(33688223-33688260)
[»] chr7 (14 HSPs)
chr7 (24-94)||(42455087-42455158)
chr7 (104-146)||(6730163-6730205)
chr7 (104-147)||(14629818-14629861)
chr7 (99-146)||(42250830-42250877)
chr7 (104-146)||(5064651-5064693)
chr7 (104-146)||(24995852-24995894)
chr7 (100-142)||(30513644-30513686)
chr7 (104-146)||(35771265-35771307)
chr7 (100-146)||(40320412-40320458)
chr7 (79-146)||(488350-488416)
chr7 (102-139)||(9122657-9122694)
chr7 (106-139)||(46759270-46759303)
chr7 (74-146)||(40257580-40257651)
chr7 (74-146)||(42607081-42607152)
[»] chr6 (9 HSPs)
chr6 (22-94)||(4827247-4827320)
chr6 (22-94)||(26227331-26227404)
chr6 (22-94)||(7532363-7532436)
chr6 (147-188)||(14211750-14211791)
chr6 (22-94)||(7531881-7531954)
chr6 (99-147)||(8384019-8384067)
chr6 (76-146)||(25371169-25371238)
chr6 (73-123)||(3337308-3337358)
chr6 (100-146)||(28975340-28975386)
[»] chr3 (9 HSPs)
chr3 (76-149)||(33968178-33968250)
chr3 (76-146)||(45297549-45297618)
chr3 (31-146)||(38337411-38337525)
chr3 (79-139)||(20313412-20313472)
chr3 (73-139)||(40819708-40819774)
chr3 (104-146)||(44064189-44064231)
chr3 (100-146)||(49160987-49161033)
chr3 (98-139)||(26836353-26836394)
chr3 (109-146)||(36232868-36232905)
[»] scaffold0129 (1 HSPs)
scaffold0129 (104-147)||(43224-43267)
[»] scaffold0150 (1 HSPs)
scaffold0150 (100-147)||(14011-14058)
[»] scaffold0189 (1 HSPs)
scaffold0189 (45-147)||(12183-12284)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 46134537 - 46134665
Alignment:
Q  18 atgaaggagagtgaaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaac 117  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  46134537 atgaaggagagtgaaaaaatcttgtggtgagtgtctttgataacatcatggtctatatttgatctaatggtaaaaagtaagttttcccatgatgggaaac 46134636  T
Q  118 aacttccctttcccatactaaaccccacc 146  Q
    |||||||||||||||||||||||| ||||    
T  46134637 aacttccctttcccatactaaaccacacc 46134665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 36271522 - 36271399
Alignment:
Q  24 gagagtgaaaa-aattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaactt 122  Q
    ||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||  ||||||||||||| |||||| ||    
T  36271522 gagagtgaaaataatattgtggtgagtgtctatgataatattatggtctatatttgatctaatggtaaaaaa-aaacttttccatgatggaaaacaattt 36271424  T
Q  123 ccctttcccatactaaaccccacca 147  Q
    ||||||  |||||||||||||||||    
T  36271423 ccctttttcatactaaaccccacca 36271399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 6767096 - 6766973
Alignment:
Q  24 gagagtgaaaa-aattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaactt 122  Q
    ||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||| ||||| ||  ||||||||||||| |||||| |     
T  6767096 gagagtgaaaataatattgtggtgagtgtctatgataatattatggtctatatttgatctaatggttaaaaa-aaacttttccatgatggaaaacaattc 6766998  T
Q  123 ccctttcccatactaaaccccacca 147  Q
    |||||| ||||||||||| ||||||    
T  6766997 cccttttccatactaaactccacca 6766973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 8560946 - 8560869
Alignment:
Q  39 ttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaa 116  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |   ||| |||||||||||||    
T  8560946 ttgtggtgagtgtctatgataacattatgatctatatttgatctaatggtcaaaaaaatactttcccatgatgggaaa 8560869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 51987956 - 51987879
Alignment:
Q  18 atgaaggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||||||||||||| ||||| || || |||||||||||||||| || |||||||||||||||||||||||| |||||    
T  51987956 atgaaggagagtgaataaaatattatgatgagtgtctatgataatattatggtctatatttgatctaatggttaaaaa 51987879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 49420957 - 49421007
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccaccaatc 150  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  49420957 ttttccatcatgggaaacaacttccctttcccatactaaacctcaccaatc 49421007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 31787578 - 31787478
Alignment:
Q  45 tgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaacccca 144  Q
    ||||| |||||||||| |  ||| ||| || || |||||||||| |||| || | ||||||||| |||||||||||||||| |||||||||||||| |||    
T  31787578 tgagtctctatgataaaagtatgttctctactttatctaatggtcaaaatta-gcttttccatggtgggaaacaacttcccattcccatactaaacgcca 31787480  T
Q  145 cc 146  Q
    ||    
T  31787479 cc 31787478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 49420156 - 49420084
Alignment:
Q  73 tatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||| |||||||||| ||||| ||| ||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  49420156 tatttaatctaatggtcaaaaa-aagctttcccatcatgggaaacaactttcctttcccatactaaacctcacc 49420084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 51988399 - 51988460
Alignment:
Q  33 aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||| || ||||||||||||||||||| || ||| |||||||||||||||||||| |||||    
T  51988399 aaaatattatggtgagtgtctatgataatattatgatctatatttgatctaatggtcaaaaa 51988460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 27418234 - 27418164
Alignment:
Q  74 atttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||| |||||| | |||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  27418234 atttgatctaatggttaaaaattactttttc-atggtgggaaacaa-ttccctttcccatactaaacctcacc 27418164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 27420269 - 27420341
Alignment:
Q  74 atttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||| ||||| ||  ||||||||| ||||||| |||||||||| ||||| |||| |||||||    
T  27420269 atttgatctaatggtcaaaaaaaatattttccatggtgggaaataacttcccttacccatgctaacccccacc 27420341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 42383785 - 42383720
Alignment:
Q  79 atctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||||||||||| |   ||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  42383785 atctaatggtaaaaaaaac--tttcccatgataggaaacaacttctctttcccatactaaaccccacc 42383720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 31788210 - 31788324
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| | ||| |||||||||||| ||| |  ||| ||| ||||| |||||||||| |||| ||| |||  ||||| |||||||||||||| | ||||    
T  31788210 aaaaaatctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttc-ccatggtgggaaacaacttctcattcc 31788308  T
Q  131 catactaaaccccacc 146  Q
    ||||||||||| ||||    
T  31788309 catactaaacctcacc 31788324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 36385710 - 36385667
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  36385710 ccatgatggaaaacaacttcccttttccatactaaaccccacca 36385667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 14924788 - 14924674
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| | ||| |||||||||||||||| |  ||| ||| ||||| || ||| ||| |||| || | ||| ||||| |||||||||||||||||||||    
T  14924788 aaaaaatctggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaatta-gctttcccatggtgggaaacaacttccctttcc 14924690  T
Q  131 catactaaaccccacc 146  Q
    || | ||||| |||||    
T  14924689 caaattaaacaccacc 14924674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 43317108 - 43317164
Alignment:
Q  88 taaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||  ||| |||||||||||||||||||| | ||||||| ||||||||||||    
T  43317108 taaaaaataa--tttcccatgatgggaaacaacttctcattcccatgctaaaccccacc 43317164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 536783 - 536738
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||    
T  536783 ttttccatcatgggaaa-aactttcctttcccatactaaaccccacc 536738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 11469698 - 11469799
Alignment:
Q  30 gaaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttc 129  Q
    |||||||| | ||| ||| |||||||||||| |  ||| ||| || || |||||||||| |||| || ||||||||||| ||  ||||||||||||||||    
T  11469698 gaaaaaatctggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaatta-gtttttccatggtgaaaaacaacttccctttc 11469796  T
Q  130 cca 132  Q
    |||    
T  11469797 cca 11469799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 34716470 - 34716424
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||||||||||  || ||||||| ||||||||||||    
T  34716470 ttttccatgatgggaaacaactctccattcccatgctaaaccccacc 34716424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 42646044 - 42646086
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||| |||| |||| ||||||||||||||||||||||||||||    
T  42646044 ccattatggaaaactacttccctttcccatactaaaccccacc 42646086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 50950886 - 50950943
Alignment:
Q  88 taaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||||| |||| | ||| |||||||||||||||| ||||||| ||||||||||||    
T  50950886 taaaaaataa-ttttcctatggtgggaaacaacttcccattcccatgctaaaccccacc 50950943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 11469195 - 11469080
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| | ||| |||||||||||||||| |  ||| ||| ||  | |||||||||| |||| || | ||| ||||| |||||||||||||||||||||    
T  11469195 aaaaaatctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaatta-gctttcccatggtgggaaacaacttccctttcc 11469097  T
Q  131 catactaaaccccacca 147  Q
     | | ||||| ||||||    
T  11469096 taaattaaacgccacca 11469080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 14925276 - 14925391
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| | ||| |||||||||||||||| |  ||| ||| || || |||||||||| |||| || | ||| ||||| ||||||||||||| |||| ||    
T  14925276 aaaaaatctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaatta-gctttcccatggtgggaaacaactttccttccc 14925374  T
Q  131 catactaaaccccacca 147  Q
    || | ||||| ||||||    
T  14925375 caaattaaacgccacca 14925391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 54006843 - 54006728
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||  ||  ||| |||||||||||||||||||||| ||||    
T  54006843 aaaaaatcttgtggtgaatgtctatgataatatcatggtctatatttgatctgatggtcaaaagaaaactttcccatgatgggaaacaacttcccattcc 54006744  T
Q  131 catactaaaccccacc 146  Q
    ||||||||||| ||||    
T  54006743 catactaaacctcacc 54006728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 54008387 - 54008502
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||  ||  ||| ||||||| |||||||||||||| ||||    
T  54008387 aaaaaatcttgtggtgaatgtctatgataatatcatggtctatatttgatctgatggtcaaaagaaaactttcccatgattggaaacaacttcccattcc 54008486  T
Q  131 catactaaaccccacc 146  Q
    ||||||||||| ||||    
T  54008487 catactaaacctcacc 54008502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 3848008 - 3847938
Alignment:
Q  25 agagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    |||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  3848008 agagtgaataaaatattatggtgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaa 3847938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 54453152 - 54453095
Alignment:
Q  88 taaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  54453152 taaaaaataa-tttttccatgatgggaaacaacttcccattcccatgctaaaccccacc 54453095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 232055 - 232099
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccaccaa 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  232055 ccatggtgggaaacaacttccctttcccatactaaaccccaccaa 232099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 25371468 - 25371541
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||||||||| ||||| || ||||||||||||||||||| || ||||||||||||  |||||||||| |||||    
T  25371468 aggagagtgaataaaatattatggtgagtgtctatgataatattatggtctatattcaatctaatggtcaaaaa 25371541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 51412631 - 51412594
Alignment:
Q  109 atgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||| |||||||||||||||||||||||||||||||||    
T  51412631 atggaaaacaacttccctttcccatactaaaccccacc 51412594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 231468 - 231436
Alignment:
Q  114 aaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||||||||||||||||||||||||||||    
T  231468 aaacaacttccctttcccatactaaaccccacc 231436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 6247464 - 6247520
Alignment:
Q  91 aaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    ||||| |||||| |||||||| |||||||||||||||||||| | ||||| ||||||    
T  6247464 aaaattagttttcccatgatgagaaacaacttccctttcccaaattaaacgccacca 6247520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 34155605 - 34155674
Alignment:
Q  76 ttgatctaatggt-aaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||| ||||||||   ||||||||| ||| |||||| ||||||||||||| ||||||||||||    
T  34155605 ttgatctaatggtcaaaaaatac--ttttccatggtggaaaacaagttccctttcccatgctaaaccccacc 34155674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 25970148 - 25970105
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||    
T  25970148 ccatggtgggaaacaactcccctttcccatgctaaaccccacca 25970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 10421515 - 10421615
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| | ||| |||||||||||||||| |  ||| ||| ||||| |||||| ||| |||| || | ||| ||||| ||| |||||||||||||||||    
T  10421515 aaaaaatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaatta-gctttcccatggtggaaaacaacttccctttcc 10421613  T
Q  131 ca 132  Q
    ||    
T  10421614 ca 10421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 39167364 - 39167458
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaa 116  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||| |||||||||||||    
T  39167364 aggagagtgaataaaatattgtggtgagtgtctatgataacattatggtctatatttgatctaatggtaaaaaa-atattttcccatgatgggaaa 39167458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 4789644 - 4789521
Alignment:
Q  22 aggagagtgaaaaaatt-ttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaac 120  Q
    ||||||||||||||| | ||||| |||| || ||| |||| |||||| |||  ||||||||||||||| || ||||| |||  ||||| |||||||||||    
T  4789644 aggagagtgaaaaaaatcttgtgttgagggtttataataaaatcatgttctccatttgatctaatggtcaagaataactttc-ccatggtgggaaacaac 4789546  T
Q  121 ttccctttcccatactaaaccccac 145  Q
    | ||||||||||| |||||||||||    
T  4789545 tcccctttcccatgctaaaccccac 4789521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 16689639 - 16689593
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  16689639 ttttccatggtgggaaagaacttccctttcccatactaaaccccacc 16689593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 4820585 - 4820454
Alignment:
Q  15 gagatgaaggagagtgaaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatggga 114  Q
    |||||| |||||||||||||||| ||||| |||||||| ||||||| || ||| |   || |  |||||||||  ||||| ||  ||| ||||| ||| |    
T  4820585 gagatggaggagagtgaaaaaatcttgtgttgagtgtccatgataaaattatgtttcttactcaatctaatggacaaaaaaaaaatttcccatggtggaa 4820486  T
Q  115 aacaacttccctttcccatactaaaccccacc 146  Q
    ||||| |||||||||||||  |||||||||||    
T  4820485 aacaatttccctttcccatgttaaaccccacc 4820454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 6803982 - 6803948
Alignment:
Q  112 ggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||||||||||||||||||||||||||||||    
T  6803982 ggaaacaacttccctttcccatactaaaccccacc 6803948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 26711604 - 26711568
Alignment:
Q  110 tgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||| |||||||||||||||||||||||    
T  26711604 tgggaaacaactttcctttcccatactaaaccccacc 26711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 26981341 - 26981305
Alignment:
Q  110 tgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||| |||||||||||||||||||||||    
T  26981341 tgggaaacaactttcctttcccatactaaaccccacc 26981305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 6007660 - 6007703
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||    
T  6007660 ccatcatgggaaacaaattccctttcccattctaaaccccacca 6007703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 7087910 - 7087961
Alignment:
Q  50 gtctatgataacatcatggtctatatttgatctaatggtaaaaaataagttt 101  Q
    ||||||||||| |||||||| | || ||||||||||||||||||| ||||||    
T  7087910 gtctatgataaaatcatggtatttagttgatctaatggtaaaaaaaaagttt 7087961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 9142089 - 9142054
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaa 139  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9142089 ccatggtgggaaacaacttccctttcccatactaaa 9142054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 4301947 - 4301905
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  4301947 ccatgatgggaaagaacttcccttttccatattaaaccccacc 4301905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 6804937 - 6804891
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||| |||||||||||| | ||||||||| ||||||||||||    
T  6804937 ttttccatggtgggaaacaactcctctttcccatgctaaaccccacc 6804891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 26712381 - 26712435
Alignment:
Q  91 aaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccac 145  Q
    ||||| || ||| ||||| |||||||||||||||||||||||| |||||| ||||    
T  26712381 aaaattagctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26712435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 26982119 - 26982173
Alignment:
Q  91 aaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccac 145  Q
    ||||| || ||| ||||| |||||||||||||||||||||||| |||||| ||||    
T  26982119 aaaattagctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26982173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 4554757 - 4554657
Alignment:
Q  45 tgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaacccca 144  Q
    |||||||||||||||| |  ||| ||| || || |||||||||| |||| ||  ||| || ||| ||| |||||| || |||||||||||||||||||||    
T  4554757 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctc-atggtggaaaacaattttcctttcccatactaaacccca 4554659  T
Q  145 cc 146  Q
    ||    
T  4554658 cc 4554657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 4555467 - 4555508
Alignment:
Q  105 catgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||||||| ||||||| |||||||| ||||||||||||    
T  4555467 catgatgggaaagaacttccatttcccatgctaaaccccacc 4555508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 12202118 - 12202194
Alignment:
Q  69 tctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||| |||| |||||||||| ||||| || |||| ||| ||| ||||||||||| |||||||||| ||||||| ||||    
T  12202118 tctacatttaatctaatggttaaaaaaaaatttt-ccacgataggaaacaactttcctttcccatgctaaacctcacc 12202194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 4555382 - 4555430
Alignment:
Q  91 aaaataagtttttccatgatgggaaacaacttccctttcccatactaaa 139  Q
    ||||| || ||| ||||| | ||||||||||||||||||||||||||||    
T  4555382 aaaattagctttcccatggtaggaaacaacttccctttcccatactaaa 4555430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 4744190 - 4744218
Alignment:
Q  121 ttccctttcccatactaaaccccaccaat 149  Q
    |||||||||||||||||||||||||||||    
T  4744190 ttccctttcccatactaaaccccaccaat 4744218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 23463478 - 23463554
Alignment:
Q  22 aggagagtgaaaa-aattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataa 97  Q
    ||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23463478 aggagagtgaaaataatattgtgatgagtgtctatgataatatcatggtctatatttgatctaatggtaaaaaataa 23463554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 41042667 - 41042572
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaa 116  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |  |||| ||||| |||||||    
T  41042667 aggagagtgaataaaatattgtggtgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatattttcccatggtgggaaa 41042572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 45139817 - 45139726
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgg 112  Q
    ||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |  |||| |||||||||    
T  45139817 aggagagtgaataaaatatcgtggtgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatattttcccatgatgg 45139726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 36391028 - 36390957
Alignment:
Q  74 atttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||| |||| | | |||  ||||| |||||||||||||||||||||||| ||||||||||||    
T  36391028 atttgatctaatggttaaaatttactttc-ccatggtgggaaacaacttccctttcccatgctaaaccccacc 36390957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 4975751 - 4975696
Alignment:
Q  91 aaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||| || ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  4975751 aaaattagcttttccatggtgggaaacaacttcccattcccatactaaacgccacc 4975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 8164408 - 8164455
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  8164408 ttttccatgatgggaaaaaactttcttttcccatactaaaccccacca 8164455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 24383076 - 24383111
Alignment:
Q  111 gggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||||||||||||||||||||||||    
T  24383076 gggaaacaacttccctttcccatactaaaccccacc 24383111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 4993659 - 4993604
Alignment:
Q  91 aaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||| || ||||||||| ||| |||||||||||| |||||||||||||| |||||    
T  4993659 aaaattagcttttccatggtggaaaacaacttcccattcccatactaaacgccacc 4993604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 4976440 - 4976553
Alignment:
Q  32 aaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttccc 131  Q
    |||||||| ||| |||||||||||| ||| |  ||| ||| ||||| |||||||||| |||| |||  ||| ||||  |||||||||||||| | | |||    
T  4976440 aaaaatttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaa-ctttcccatagtgggaaacaacttctcatcccc 4976538  T
Q  132 atactaaaccccacc 146  Q
    |||||||||| ||||    
T  4976539 atactaaacctcacc 4976553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 4994347 - 4994460
Alignment:
Q  32 aaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttccc 131  Q
    |||||||| ||| |||||||||||| ||| |  ||| ||| ||||| |||||||||| |||| |||  ||| ||||  |||||||||||||| | | |||    
T  4994347 aaaaatttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaa-ctttcccatagtgggaaacaacttctcatcccc 4994445  T
Q  132 atactaaaccccacc 146  Q
    |||||||||| ||||    
T  4994446 atactaaacctcacc 4994460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 15602800 - 15602863
Alignment:
Q  77 tgatctaatggt-aaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaacc 141  Q
    |||||||||||| ||||||||  |||| ||||| ||||||||||||||||||||| || |||||||    
T  15602800 tgatctaatggtcaaaaaata--ttttcccatggtgggaaacaacttccctttcctatgctaaacc 15602863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 41519931 - 41519967
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaac 140  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  41519931 ccatggtgggaaaaaacttccctttcccatactaaac 41519967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 44154984 - 44155016
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttccca 132  Q
    |||||||| ||||||||||||||||||||||||    
T  44154984 ttttccatcatgggaaacaacttccctttccca 44155016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 21459 - 21532
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  21459 aggagagtgaataaaatattgtggtgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaa 21532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 12350082 - 12349966
Alignment:
Q  30 gaaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttc 129  Q
    |||||||| | ||| |||||||||||||||| | |||| ||| || || |||||||||| |||| || ||||||||||| ||||||||||||||||||||    
T  12350082 gaaaaaatctggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaatta-gtttttccatggtgggaaacaacttccctttc 12349984  T
Q  130 ccatactaaaccccacca 147  Q
    ||| | ||||| ||||||    
T  12349983 ccaaattaaacgccacca 12349966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 43924952 - 43925066
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| | ||| |||||||||||||||| |  ||| ||| ||||| |||||| ||| |||| ||| ||| || ||| |||||||||||||||||||||    
T  43924952 aaaaaatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctc-atggtgggaaacaacttccctttcc 43925050  T
Q  131 catactaaaccccacc 146  Q
    || | ||||| |||||    
T  43925051 caaattaaacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 35943118 - 35943076
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||| |||||||||||||||||||||||| ||||||||||||    
T  35943118 ccatggtgggaaacaacttccctttcccatgctaaaccccacc 35943076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 35839759 - 35839722
Alignment:
Q  109 atgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  35839759 atgggaaacaacttccctttcccatgctaaaccccacc 35839722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 43924604 - 43924504
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||||| ||| ||||||| |||||||| |  ||| ||| ||||| |||||| ||| |||| || | ||| ||||| |||||||||||||||||||||    
T  43924604 aaaaaatttggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaatta-gctttcccatggtgggaaacaacttccctttcc 43924506  T
Q  131 ca 132  Q
    ||    
T  43924505 ca 43924504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 34364681 - 34364729
Alignment:
Q  99 tttttccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    |||||||||||||| ||||||||||||||| |||| |||||| ||||||    
T  34364681 tttttccatgatggaaaacaacttcccttttccattctaaactccacca 34364729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 35840542 - 35840578
Alignment:
Q  110 tgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35840542 tgggaaacaacttccctttcccatgctaaaccccacc 35840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 40450963 - 40451034
Alignment:
Q  74 atttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||| |||| | | |||  ||||| ||||||||||||| | |||||||||||||||||||||    
T  40450963 atttgatctaatggttaaaatttactttc-ccatggtgggaaacaacttacatttcccatactaaaccccacc 40451034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 38660111 - 38660076
Alignment:
Q  111 gggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||||||||||||||||||| ||||    
T  38660111 gggaaacaacttccctttcccatactaaacctcacc 38660076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 27321723 - 27321599
Alignment:
Q  22 aggagagtgaaaaaatt-ttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaac 120  Q
    ||||||||||||||| | ||||| |||| || ||| |||| |||||| |||  |||| |||||||| | || ||||| |||||| ||| |||||||||||    
T  27321723 aggagagtgaaaaaaatcttgtgttgagggtttataataaaatcatgttctccatttaatctaatgatcaataataactttttc-atggtgggaaacaac 27321625  T
Q  121 ttccctttcccatactaaaccccacc 146  Q
    |    |||||||| ||||||||||||    
T  27321624 tcttatttcccatgctaaaccccacc 27321599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 33688260 - 33688223
Alignment:
Q  109 atgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  33688260 atgggaaactacttccctttcccatactaaactccacc 33688223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 42455158 - 42455087
Alignment:
Q  24 gagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  42455158 gagagtgaataaaatattatggtgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaa 42455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 6730163 - 6730205
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||| |||||||||||||||||||||||| ||||||||||||    
T  6730163 ccatggtgggaaacaacttccctttcccatgctaaaccccacc 6730205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 14629861 - 14629818
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||    
T  14629861 ccatgatggaaaagaacttccctttcccatactaaactccacca 14629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 42250877 - 42250830
Alignment:
Q  99 tttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||| |||||||| |||||| |||||||||||||||| |||||    
T  42250877 tttttccatcatgggaaagaacttctctttcccatactaaactccacc 42250830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 5064651 - 5064693
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||    
T  5064651 ccatgatgggaaagaacttcccattcccatgctaaaccccacc 5064693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 24995894 - 24995852
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||    
T  24995894 ccatggtgggaaacaactcccctttcccattctaaaccccacc 24995852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 30513686 - 30513644
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccc 142  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||    
T  30513686 ttttccataatgagaaacaactcccctttcccatactaaaccc 30513644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 35771265 - 35771307
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||| |||||||||||||  ||||||||||||||||||||||    
T  35771265 ccatggtgggaaacaactttgctttcccatactaaaccccacc 35771307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 40320412 - 40320458
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  40320412 ttttccatggtgggaaacaactctcctttcccatgctaaaccccacc 40320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 488350 - 488416
Alignment:
Q  79 atctaatggt-aaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||||| ||||||||  |||||| ||||||||||||||||  ||||||| |||||||| ||||||    
T  488350 atctaatggtcaaaaaata--tttttctatgatgggaaacaactctcctttcctatactaaatcccacc 488416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 9122694 - 9122657
Alignment:
Q  102 ttccatgatgggaaacaacttccctttcccatactaaa 139  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  9122694 ttccatggtgggaaacaacttccctttcccatgctaaa 9122657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 46759270 - 46759303
Alignment:
Q  106 atgatgggaaacaacttccctttcccatactaaa 139  Q
    |||||||||||||||| |||||||||||||||||    
T  46759270 atgatgggaaacaactcccctttcccatactaaa 46759303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 40257651 - 40257580
Alignment:
Q  74 atttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||  |||||||| |||| ||||| | | ||||||||  | |||||||||||||||||||||    
T  40257651 atttgatctaatggacaaaaataactttt-ccatggtcgaaaacaactctcatttcccatactaaaccccacc 40257580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 42607152 - 42607081
Alignment:
Q  74 atttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||||  ||||| || |||  ||||| |||||||||| | ||||||||||| ||||||||||||    
T  42607152 atttgatctaatggacaaaaacaactttc-ccatggtgggaaacaattcccctttcccatgctaaaccccacc 42607081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 4827247 - 4827320
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||||||||| ||||| ||||||||||||||||| |||| || |||||||||||||||||||||||| |||||    
T  4827247 aggagagtgaataaaatattgtggtgagtgtctataataatattatggtctatatttgatctaatggtcaaaaa 4827320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 26227331 - 26227404
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| |||  ||||||||||||||||||| |||||    
T  26227331 aggagagtgaataaaatattgtggtgagtgtctatgataacattatgaactatatttgatctaatggtcaaaaa 26227404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 7532363 - 7532436
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||||||||| ||||| || ||||||||||||||||| | || |||||||||||||||||||||||| |||||    
T  7532363 aggagagtgaataaaatattatggtgagtgtctatgatgatattatggtctatatttgatctaatggttaaaaa 7532436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 14211750 - 14211791
Alignment:
Q  147 aatctcacaatgatttaaaccgataagaaactatgtatataa 188  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  14211750 aatctcacaatgatttaaaccaataagaaactatgtatataa 14211791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 7531954 - 7531881
Alignment:
Q  22 aggagagtgaa-aaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaa 94  Q
    ||||||||||| ||||| || |||||| |||||||||||| || ||| | |||||||||||||||||| |||||    
T  7531954 aggagagtgaataaaatattatggtgaatgtctatgataatattatgatttatatttgatctaatggtcaaaaa 7531881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 8384019 - 8384067
Alignment:
Q  99 tttttccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    |||||||||| |||||||||||| | ||||||||| |||||||||||||    
T  8384019 tttttccatggtgggaaacaactccactttcccatgctaaaccccacca 8384067  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 25371238 - 25371169
Alignment:
Q  76 ttgatctaatggt-aaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||| ||||||||  |||| ||||| |||||||||| ||| ||||||||| ||||||||||||    
T  25371238 ttgatctaatggtcaaaaaata--ttttcccatggtgggaaacaagttcactttcccatgctaaaccccacc 25371169  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 3337308 - 3337358
Alignment:
Q  73 tatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttc 123  Q
    ||||||||||||||||||||||| | |||||||||| ||| ||| ||||||    
T  3337308 tatttgatctaatggtaaaaaatcaatttttccatggtggaaaaaaacttc 3337358  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 28975386 - 28975340
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  28975386 ttttccatgataggaaacaactctcctttcccatgctaaaccccacc 28975340  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 33968250 - 33968178
Alignment:
Q  76 ttgatctaatggt-aaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccaccaat 149  Q
    ||||||||||||| ||||||||  |||| ||||| |||||||||| ||||||||||||| |||||||||||||||    
T  33968250 ttgatctaatggtcaaaaaata--ttttcccatggtgggaaacaagttccctttcccatgctaaaccccaccaat 33968178  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 45297618 - 45297549
Alignment:
Q  76 ttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||| ||||| || |||  ||||||||||||||||||  |||||||||||||||||||||||    
T  45297618 ttgatctaatggttaaaaaaaactttc-ccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 38337411 - 38337525
Alignment:
Q  31 aaaaaattttgtggtgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcc 130  Q
    ||||||| | ||| |||||||||||||||| |  ||| ||| ||||| |||||| ||| |||| || | ||| ||||| |||||||||||||||||||||    
T  38337411 aaaaaatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaatta-gctttcccatggtgggaaacaacttccctttcc 38337509  T
Q  131 catactaaaccccacc 146  Q
    || | ||||| |||||    
T  38337510 caaattaaacgccacc 38337525  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 20313412 - 20313472
Alignment:
Q  79 atctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaa 139  Q
    |||||||||||||||   | |||| |||||||||||||  |||||||||||||||||||||    
T  20313412 atctaatggtaaaaatccaattttcccatgatgggaaaatacttccctttcccatactaaa 20313472  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 40819774 - 40819708
Alignment:
Q  73 tatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaa 139  Q
    ||||||||||||||||||||||| |  ||| ||||||||| ||| |||||| ||| |||||| ||||    
T  40819774 tatttgatctaatggtaaaaaatcaactttcccatgatggaaaataacttcacttccccatattaaa 40819708  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 44064231 - 44064189
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||    
T  44064231 ccatgatgggaaagaacttcccttttccatactataccccacc 44064189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 49161033 - 49160987
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacc 146  Q
    ||||||||| | |||||||||| ||||||||||| ||||||||||||    
T  49161033 ttttccatggtaggaaacaactcccctttcccatgctaaaccccacc 49160987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 26836394 - 26836353
Alignment:
Q  98 gtttttccatgatgggaaacaacttccctttcccatactaaa 139  Q
    |||||||||||||||||||||| | ||||||||||| |||||    
T  26836394 gtttttccatgatgggaaacaattcccctttcccatgctaaa 26836353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 36232905 - 36232868
Alignment:
Q  109 atgggaaacaacttccctttcccatactaaaccccacc 146  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  36232905 atgggaaagaactttcctttcccatactaaaccccacc 36232868  T

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Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 43224 - 43267
Alignment:
Q  104 ccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  43224 ccatgatgggaaacaactccccttttccatactaaaccccacca 43267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 14058 - 14011
Alignment:
Q  100 ttttccatgatgggaaacaacttccctttcccatactaaaccccacca 147  Q
    ||||||||| |||||||||||| ||||||||||| ||||| |||||||    
T  14058 ttttccatggtgggaaacaactcccctttcccatgctaaatcccacca 14011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 12284 - 12183
Alignment:
Q  45 tgagtgtctatgataacatcatggtctatatttgatctaatggtaaaaaataagtttttccatgatgggaaacaacttccctttcccatactaaacccca 144  Q
    |||||||||||||||| |  ||| ||| ||||| |||||| ||| |||| ||| ||| || ||| |||||||||||||| |||||||| | ||||| |||    
T  12284 tgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctc-atggtgggaaacaacttctctttcccaaattaaacgcca 12186  T
Q  145 cca 147  Q
    |||    
T  12185 cca 12183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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