View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_high_12 (Length: 288)
Name: NF1928_high_12
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 39294233 - 39293976
Alignment:
| Q |
13 |
aaaataaatatgaacttagtttccgtgtgaaataattattgatccgattttacttatcttttgctgaactccagattatcagaccatttttctttaaaat |
112 |
Q |
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| T |
39294233 |
aaaacaaatattaacttagttttcatgtgaaataattattaatccgattttatttatctcttgctgaactccagattatcagaccatttttctttaaaat |
39294134 |
T |
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| Q |
113 |
ctagagaattagaaagaaagnnnnnnn-gttatttcatgctcaaagatgttcaaagttacgttccttgctgattatgagacaccctggaggtactctaaa |
211 |
Q |
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| T |
39294133 |
ctagagaattagaaagaaaaaaaaaaaagttattacatgctcaaagatgttcaaagttacgttccttgctgattatgagacaccctggaggtgctctaaa |
39294034 |
T |
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| Q |
212 |
gaggatcagccgaacagatgcaagccgaaattaactgaaaggaaaaagatgatgaccg |
269 |
Q |
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| T |
39294033 |
gaggatcagccgaacacatgcaagccgaaattaactgaaaggaaaaagatgataaccg |
39293976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 40384909 - 40384942
Alignment:
| Q |
42 |
aaataattattgatccgattttacttatcttttg |
75 |
Q |
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| T |
40384909 |
aaataattattgatcagattttacttatcttttg |
40384942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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