View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_high_3 (Length: 489)
Name: NF1928_high_3
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 37757792 - 37757325
Alignment:
| Q |
1 |
tatgcagtatgtagcagcatcaggatcacaacacaattttgatgtgttctatgtgaaactattctgtgtaggtgcgcttatatattttaggatgtttaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757792 |
tatgcagtatgtagcagcatcaggatcacaacacaattttgatgtgttctatgtgaaactattctgtgtaggtgcgcttatatattttaggatgtttaca |
37757693 |
T |
|
| Q |
101 |
gtttatcgcatcattaagctggtcaaatttttaatgtgaccataaagttactaccggcacttaccatacatatgctggctttagtcgctggtggaccttg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37757692 |
gtttatcgcatcattaagctggtcaaatttttaatgtgaccataaagttactaccggcacttaccatacatatgctggctttagtcgctggtgaaccttg |
37757593 |
T |
|
| Q |
201 |
ttcacactcatatctaaagaaaaatcatgaaatttcagctgcttagttatgtgtgtgccttgaaagcatttcacatgtgcgcaggttaaaaagtcaaggt |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757592 |
ttcacactcatatctaaagaaaaatcataaaatttcagctgcttagttatgtgtgtgccttgaaagcatttcacatgtgcgcaggttaaaaagtcaaggt |
37757493 |
T |
|
| Q |
301 |
gtttggtagctgatcgccatcagtgctttctggtttttctttgataatttaatgaatattctt-attcagaatcagcatccaatgcattggattaagcta |
399 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37757492 |
gtttggtagctgatcgctatcagtgctttctggtttttctttgataatttaatgaatattcttaattcagaatcagcatccaatgcattggattaagcta |
37757393 |
T |
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| Q |
400 |
ctcgtacgtgtattcttgtgtatatagaagtacctgtcacagggtatagagtacctcatcatttgaca |
467 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757392 |
ctcgtacgtgtattcttgtgtatatagaagtacctgtcacagggtatagagtacctcatcatttgaca |
37757325 |
T |
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