View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1928_high_4 (Length: 477)
Name: NF1928_high_4
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Complemental strand, 51855083 - 51854645
Alignment:
| Q |
14 |
agagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacactac--tacac |
111 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
51855083 |
agagcaaaatgtagctaagtttatatcaacactagctggttgaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacactaccctacac |
51854984 |
T |
|
| Q |
112 |
tagcttttgttgctgtt---aatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaat |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854983 |
tagcttttgttgctgttgttaatcaaattggtggtgatggccaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaat |
51854884 |
T |
|
| Q |
209 |
gcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854883 |
gcctaattcagtttcatagttggataagctcaagtactatttctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattga |
51854784 |
T |
|
| Q |
309 |
atatgggtgatatgctttgacagtcgagcaacaacctttgaatcttcatgtcaaaacagtttgaatgttttgatttcatattgattatgtagttttattt |
408 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854783 |
atatgggtgatatgctttgacagtcgatcaacaacctttgaatcttcatgtcaaaacagtttgaatgttttgatttcatattgattatgtagttttattt |
51854684 |
T |
|
| Q |
409 |
caacaaccttttgttttcataagatttaagatttgacat |
447 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51854683 |
caacaaccttttgttttcataagatttaagatttgacat |
51854645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 8944318 - 8943913
Alignment:
| Q |
14 |
agagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacactac--tacac |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
8944318 |
agagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacac |
8944219 |
T |
|
| Q |
112 |
tagcttttgttgctgtt---aatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaat |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8944218 |
tagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaat |
8944119 |
T |
|
| Q |
209 |
gcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattga |
308 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8944118 |
gcctaattcagtttcatagttggataatctcaagtactattgctagatcaatatgaaggagcaatactctgcaacatttagtcaaagcgaaagaaattga |
8944019 |
T |
|
| Q |
309 |
atatgggtgatatgctttgacagtcgagcaacaacctttgaatcttcatgtcaaaacagtttgaatgttttgatttcatattgattatgtagttttattt |
408 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
8944018 |
atatgggtgatatgctttgacagtcgataaacaacctttgaatcttcatgtcaaaacaatatgaatgttttgatttcatattgattatgtagttttattt |
8943919 |
T |
|
| Q |
409 |
caacaa |
414 |
Q |
| |
|
|||||| |
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|
| T |
8943918 |
caacaa |
8943913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 26887341 - 26887664
Alignment:
| Q |
14 |
agagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacactac--tacac |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
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| T |
26887341 |
agagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcgcatgctacttcaatagacactacactacac |
26887440 |
T |
|
| Q |
112 |
tagcttttgttgctgtt---aatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaat |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |
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|
| T |
26887441 |
tagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttaaaaaaccttcaagaactaaat |
26887540 |
T |
|
| Q |
209 |
gcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26887541 |
gcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattga |
26887640 |
T |
|
| Q |
309 |
atatgggtgatatgctttgacagt |
332 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
26887641 |
atatgggtgatatgctttgacagt |
26887664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 349 - 448
Target Start/End: Original strand, 26887732 - 26887831
Alignment:
| Q |
349 |
aatcttcatgtcaaaacagtttgaatgttttgatttcatattgattatgtagttttatttcaacaaccttttgttttcataagatttaagatttgacatc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26887732 |
aatcttcatgtcaaaacagtttgaatgttttgatttcatattgattatgtaggtttatttcaacaaccttttgttttcataagatttaagatttgacatc |
26887831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 26887667 - 26887710
Alignment:
| Q |
288 |
tgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagt |
332 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
26887667 |
tgtcaaagcgaaagaa-ttgaatatggatgatatgctttgacagt |
26887710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 21989053 - 21988833
Alignment:
| Q |
20 |
aaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacactactacactagctttt |
119 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||| ||||| | |||||||| ||||| ||| || ||||||||||| |||||||| |||||| |||| |
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|
| T |
21989053 |
aaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagcggacactacgacactaacttta |
21988954 |
T |
|
| Q |
120 |
gttgctgtt---aatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaatt |
216 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||| | || |||||||||||||||||| |
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|
| T |
21988953 |
gttgctgttgttaatcaaactggtggtgatggctaagccatttgcctaattcaattttaatttcatagttagaaaaccatcgagagctaaatgcctaatt |
21988854 |
T |
|
| Q |
217 |
cagtttcatagttggataagc |
237 |
Q |
| |
|
|| ||| ||||||||| |||| |
|
|
| T |
21988853 |
caattttatagttggaaaagc |
21988833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 13578125 - 13578195
Alignment:
| Q |
385 |
catattgattatgtagttttatttcaacaaccttttgttttcataagatttaagatttgacatcgcggtcg |
455 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
13578125 |
catattgattatctagttttatttcaacaaccttttgttttcataagatttaagatttgatatcacggtcg |
13578195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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