View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_high_5 (Length: 450)
Name: NF1928_high_5
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 14741813 - 14742232
Alignment:
| Q |
20 |
catgagagcgtaagcgtgtcgatgatatcaaaatctattaaactcctaccatgtagcactattttggcaatttgaacatgagactacaaaaatgaaaata |
119 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741813 |
catgagagcataagcgtgtcgatgatatcaaaatctattaaactcctaccatgtagcactattttggcaatttgaacatgagactacaaaaatgaaaata |
14741912 |
T |
|
| Q |
120 |
atgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741913 |
atgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaa |
14742012 |
T |
|
| Q |
220 |
tgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtac |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742013 |
tgcataagttaatcttctgatatatttcttatgataaccatac-aatattaaatttgaacacaactttgcaaaataaaaatgatgaaccaacctcagtac |
14742111 |
T |
|
| Q |
320 |
ttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742112 |
ttaattctctagtcttgtttgcataagtggcttctagagcaagcttattactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagc |
14742211 |
T |
|
| Q |
420 |
attctcccagcctttgcttct |
440 |
Q |
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|||||||| ||||||| |||| |
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| T |
14742212 |
attctccctgcctttgtttct |
14742232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 92 - 383
Target Start/End: Original strand, 14734910 - 14735200
Alignment:
| Q |
92 |
tgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaaca |
191 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
14734910 |
tgaacatgagaccacaaaaatgaaaataatgggtgattctttgacgaacctgtactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatc |
14735009 |
T |
|
| Q |
192 |
ttggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaa |
291 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |
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| T |
14735010 |
ttggacaagtagagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatac-aatataaaatttaaacacaactctgcaa |
14735108 |
T |
|
| Q |
292 |
aataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatg |
383 |
Q |
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| T |
14735109 |
aacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcaattgcttatg |
14735200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 14998620 - 14998525
Alignment:
| Q |
124 |
gtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaa |
219 |
Q |
| |
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|||||| |||||| |||||||||| |||||| | |||||||||||||| |||||||| | |||| || |||||||| | |||||||| ||||| |
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| T |
14998620 |
gtgattttttcacaaacctgcactttgcaattgcttttgttttgagacttgtcaaagccatatcaatcttagacagctggaacaacaaaagttaaa |
14998525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 139 - 369
Target Start/End: Complemental strand, 29467453 - 29467226
Alignment:
| Q |
139 |
acctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctg |
238 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||| | ||||| || |||||||| | |||||||| ||||||||| || |||| | |||| |
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| T |
29467453 |
acctgcactgtgaaatcgctgttgttttgagacttctcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctg |
29467354 |
T |
|
| Q |
239 |
atatatttcttatgataaccatacaaatatta-aatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgt |
337 |
Q |
| |
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| ||| ||||| | | ||||| | |||| | |||||||||| || || || |||||| |||||||||||||||| |||||||| |||||| | | |
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| T |
29467353 |
aaatacttcttccaagtaacatac-atcattagattttaaacacagctctg---aaaaaaaataatgaaccaacctcagtgcttaattccctagtcatat |
29467258 |
T |
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| Q |
338 |
ttgcataagtggcttctagagcaagcttttta |
369 |
Q |
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| |||||||| |||||| |||||||| ||||| |
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| T |
29467257 |
tggcataagttgcttcttgagcaagcctttta |
29467226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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