View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_high_6 (Length: 419)
Name: NF1928_high_6
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 151 - 408
Target Start/End: Original strand, 9695905 - 9696162
Alignment:
| Q |
151 |
caggaggaggatgaggagtaaagttggtggtgctgaaggaagaagcgtaggagtaactgcaatagaataattttcattattataggttggaatgtaattg |
250 |
Q |
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| T |
9695905 |
caggaggaggatgaggagtaaggttggtggtgctgaaggaagaagcgtaggattaactgcaatagaataattttcattattataggttggaatgtaattg |
9696004 |
T |
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| Q |
251 |
ggaaactttttagatccaaagctgttttttgatgaacaaacagtttttaggtttatattagcgcatagtttaagtgtagattcagcttcatgatctgtac |
350 |
Q |
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| T |
9696005 |
ggaaactttttagatccaaagctgttttgcgatgaacaaacagttgttaggtttatattagcgcatagtttaagtgtagattcagcttcatgatctgtac |
9696104 |
T |
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| Q |
351 |
ttaaatcccacctttattattaatacagacttagtttgttatggtacattctgatgat |
408 |
Q |
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| T |
9696105 |
ttaaatcccacctttattattaatacagactcagtttgttatggtacattctgttgat |
9696162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9695755 - 9695791
Alignment:
| Q |
1 |
tcggaggaagaaggatctgagaagtccaagtctgaag |
37 |
Q |
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| T |
9695755 |
tcggaggaagaaggatctgagaagtccaagtctgaag |
9695791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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