View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1928_high_7 (Length: 396)
Name: NF1928_high_7
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 34325338 - 34325599
Alignment:
| Q |
19 |
aacttggtgt-gagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatat |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34325338 |
aacttggtgttgagtgaatcatggactaagctcttcactattggaccttttcccttctacattgagagacttattggagcaaggaggaatggtgatatat |
34325437 |
T |
|
| Q |
118 |
ttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataattta |
217 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34325438 |
ttttcgaaaaaaaagatgaaaaaatagtctgctatgatttaagtacacacatggttgaggaactcggtcttgaagaagcaccatcaaatagaataattta |
34325537 |
T |
|
| Q |
218 |
caagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34325538 |
caagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
34325599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 29352481 - 29352218
Alignment:
| Q |
19 |
aacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || || |||||||| ||||||||||||||||||||| |
|
|
| T |
29352481 |
aacttggtgtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattcaggaacctattggagtagggaggaatggtgatatatt |
29352382 |
T |
|
| Q |
119 |
-tttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttg---aggaactcggtcttgaagaagcaccatcaaatagaataat |
214 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29352381 |
ctttcaaaaaa-aagataaaaaaatagtctgctatgatttaagtacacgcatggttgaggaggaacttggtcttgaagaagcaccatcaaatagaataat |
29352283 |
T |
|
| Q |
215 |
ttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
279 |
Q |
| |
|
|||||||||| ||||||||| |||||||| | | ||||||||||||||||||||| ||||||| |
|
|
| T |
29352282 |
ttacaagaaagagtggtttgacaaatccaataacagattagttggttttcttgttctaaactaag |
29352218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 278 - 396
Target Start/End: Original strand, 34326431 - 34326549
Alignment:
| Q |
278 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34326431 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
34326530 |
T |
|
| Q |
378 |
cctccctgctgtcctgctt |
396 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
34326531 |
cctcgctgctgtcctgctt |
34326549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 27589318 - 27589270
Alignment:
| Q |
88 |
ttattggagcagggaggaatggtgatatatttttcaaaaaagaagatga |
136 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||||||| ||||| |
|
|
| T |
27589318 |
ttattggagcaggggagaagggtgatatattttttaaaaaagatgatga |
27589270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 44918462 - 44918414
Alignment:
| Q |
88 |
ttattggagcagggaggaatggtgatatatttttcaaaaaagaagatga |
136 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
44918462 |
ttatcggagcagggaaaaatggtgatatatttttccaaaaaaaagatga |
44918414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 4027932 - 4028192
Alignment:
| Q |
19 |
aacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4027932 |
aacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctctattgagagacctattggagcagggaggaatggtgatatatt |
4028031 |
T |
|
| Q |
119 |
tttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttac |
218 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4028032 |
cttcaaaaaaaaaggtaaaaaaatagtctgctatgatttaagcacacacatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttac |
4028131 |
T |
|
| Q |
219 |
aagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
279 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4028132 |
aagaaaaagtggtttgtcaattccagtaaatcattagttggttttcttgttctcaactaag |
4028192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 278 - 396
Target Start/End: Original strand, 4028507 - 4028625
Alignment:
| Q |
278 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
4028507 |
agtgtctggtgcggtaatggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacgg |
4028606 |
T |
|
| Q |
378 |
cctccctgctgtcctgctt |
396 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
4028607 |
cctcactgctgtcctgctt |
4028625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 30249834 - 30250097
Alignment:
| Q |
19 |
aacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatt |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||| ||||| ||||||||||||||| |
|
|
| T |
30249834 |
aacttggagtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatatt |
30249933 |
T |
|
| Q |
119 |
tttc-aaaaaagaa--gatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatt |
215 |
Q |
| |
|
||| |||||| || |||| |||| |||||||||||||||||||||||| |||| |||||||| || ||||||||||| |||||||||||||||||| | |
|
|
| T |
30249934 |
cttcgaaaaaataaacgatggaaaattagtctgctatgatttaagtacacacatgtttgaggaaatcagtcttgaagaaccaccatcaaatagaataact |
30250033 |
T |
|
| Q |
216 |
tacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
279 |
Q |
| |
|
|||||||||||||||||| || ||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
30250034 |
tacaagaaaaagtggtttatcgaattggatcacacattagttggttttcttgttttcaactaag |
30250097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 25628221 - 25628349
Alignment:
| Q |
19 |
aacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| || | | || | | ||||||||||||||| |||||||||||||| |
|
|
| T |
25628221 |
aacttggtgtgagtgaatcatggactaaactcttcattattggacctttatccgacctttttatgtatcctattggagcagggagtaatggtgatatatt |
25628320 |
T |
|
| Q |
119 |
tttcaaaaaagaagatgaaaaaatagtct |
147 |
Q |
| |
|
|||||| || ||||| |||| |||||| |
|
|
| T |
25628321 |
cttcaaagcaggagatggaaaactagtct |
25628349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 279 - 396
Target Start/End: Complemental strand, 28111041 - 28110924
Alignment:
| Q |
279 |
gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc |
378 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| |||||||||||||||||||| |
|
|
| T |
28111041 |
gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc |
28110942 |
T |
|
| Q |
379 |
ctccctgctgtcctgctt |
396 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
28110941 |
ctcattgctgtcctgctt |
28110924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 279 - 396
Target Start/End: Original strand, 24837208 - 24837325
Alignment:
| Q |
279 |
gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc |
378 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| |||||||||||||||||||| |
|
|
| T |
24837208 |
gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc |
24837307 |
T |
|
| Q |
379 |
ctccctgctgtcctgctt |
396 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
24837308 |
ctcattgctgtcctgctt |
24837325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 30651596 - 30651724
Alignment:
| Q |
19 |
aacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||| || | | || | | ||||||||||||||| |||||||||||||| |
|
|
| T |
30651596 |
aacttggtgtgagtgaatcatggactaaactctttattattggacctttgtccgacctttttacgtatcctattggagcagggagtaatggtgatatatt |
30651695 |
T |
|
| Q |
119 |
tttcaaaaaagaagatgaaaaaatagtct |
147 |
Q |
| |
|
|||||| || ||||| |||| |||||| |
|
|
| T |
30651696 |
cttcaaagcaggagatggaaaactagtct |
30651724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 31777942 - 31777990
Alignment:
| Q |
19 |
aacttggtgtgagtgaatcatggactaaactcttcactattggaccttt |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
31777942 |
aacttggtgtgagtgaatcatggactaaactctttattattggaccttt |
31777990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 31778012 - 31778070
Alignment:
| Q |
89 |
tattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtct |
147 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| || ||||| |||| |||||| |
|
|
| T |
31778012 |
tattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtct |
31778070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University