View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_low_1 (Length: 620)
Name: NF1928_low_1
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Original strand, 52630334 - 52630934
Alignment:
| Q |
18 |
ggaacaagtctgaattacgatcttctgaacacgtcaacacctcaccctttcctatattaatacacaagtacacacaccatgacataccaatttgagaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52630334 |
ggaacaagtctgaattacgatcttctgaacacgtcaacacctcaccctttcctatattaatacacaagtacacataccatgacataccaatttgagaaca |
52630433 |
T |
|
| Q |
118 |
gtactaggacagtgggagaatgaagaatgcattttatagcaatgattaattaagtagcaagcaattaacttattattaagtacctgtaactacatctagc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52630434 |
gtactaggacagtgggagaatgaagaatgcattttatagtagtgattaattaagtagcaagcaattaacttattattaaatacctgtaactacatctagc |
52630533 |
T |
|
| Q |
218 |
tcaaaaacattggagatttgaggaccgtgattgaaggtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630534 |
tcaaaaacattggagatttgaggaccgtgattgaaggtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtcc |
52630633 |
T |
|
| Q |
318 |
aagacataggtgctaacccatactccaatgttgacttcagaacatgtatccataattcaccaccccaaacatccacatacatttctttctcccaaattag |
417 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52630634 |
aagacataggtgctaacccatactccaatgttgccttcagaacatgtatccataattcaccaccccaaacatccacatacatttctttctcccaaactag |
52630733 |
T |
|
| Q |
418 |
aggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccctgtatctgcttgtccgtttattgagtgtccgtgtcctctcgct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52630734 |
aggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccttgtatccgcttgtccgtttattgagtgtccgtgtcctctcgct |
52630833 |
T |
|
| Q |
518 |
gacaccgcaa---acttctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcgaaccaccgcaatcgtctctcctatgc |
614 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52630834 |
gacaccgcaaagtactgctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcgaaccaccgcaatcgtctctcctttgc |
52630933 |
T |
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| Q |
615 |
t |
615 |
Q |
| |
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| |
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| T |
52630934 |
t |
52630934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 52454570 - 52454641
Alignment:
| Q |
250 |
gaaggtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaaga |
321 |
Q |
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||||||||| |||||||||||| ||||||| ||||| ||||| || || |||||||| |||||||||||||| |
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| T |
52454570 |
gaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaataatcagtccaaga |
52454641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 17243504 - 17243437
Alignment:
| Q |
254 |
gtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaaga |
321 |
Q |
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|||||||| | ||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
17243504 |
gtttggcccccaattccagcattagagagagtgccaccaacagacaaatacaagtaatcagtccaaga |
17243437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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