View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_low_13 (Length: 324)
Name: NF1928_low_13
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 25925191 - 25925498
Alignment:
| Q |
1 |
tatgtcagaggtttgtccttagttgctgatagtagtcaattttatgtg--ttgaatgccttaacttgaagatattgttgtaatttttgcataattggcaa |
98 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25925191 |
tatggcagaggtttgtccttagttgctgatagtagtcaattttatgtgcgttgaatgccttaacttgaagatattgttgtaatttttgcataattgacaa |
25925290 |
T |
|
| Q |
99 |
attcatccaggctgaatatgtttgcgactatattcttggtggtgaatttaatggatccagttcaactagagaggcatttttcgaggttcgacttttgtcc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25925291 |
attcatccaggctgaatatgtttgcgactatattcttggtggtgaatttaatggatccagttcaactagagaggcatttttcgaggttcgacttttgtcc |
25925390 |
T |
|
| Q |
199 |
tgtcgtgtagttgatcttgctttcaaaacccttcaatgttgtgattatttgatttttcttgtacagaaatttaaatttgcactttctaagggctttgatc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25925391 |
tgtcgtgtagttgatcttgctttcaaaacccttcaatgttgtgattatttgatttttcttgtacagaaatttaaatttgcactttctaagggctttgatc |
25925490 |
T |
|
| Q |
299 |
cagacagt |
306 |
Q |
| |
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|||||||| |
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| T |
25925491 |
cagacagt |
25925498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 304
Target Start/End: Original strand, 25946847 - 25947147
Alignment:
| Q |
7 |
agaggtttgtccttagttgctgatagtagtcaattttatgtgt--tgaatgccttaacttgaagatatt-gttgtaatttttgcataattggcaaattca |
103 |
Q |
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| T |
25946847 |
agaggtttgtcccaagttgctgctagtatttgatttaatgtgtgttgaatgtcttaacttgaagaaatttgtactaacttttgcataactgacaaactta |
25946946 |
T |
|
| Q |
104 |
tccaggctgaatatgtttgcgactatattcttggtggtgaatttaatggatccagttcaactagagaggcatttttcgaggttcgacttttgtcctgtcg |
203 |
Q |
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| T |
25946947 |
tccaggctaaatatgtttgcgattatattcttggtggtgaacttaatggatatagctcaaccagagaggcatttttcgaggtacagcatttgtcctat-- |
25947044 |
T |
|
| Q |
204 |
tgtagttga-tcttgctttcaaaaccc-------ttcaatgttgtgattatttgatttttcttgtacagaaatttaaatttgcactttctaagggctttg |
295 |
Q |
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| | | ||||||||||||||||| ||| | || || |||||| ||| ||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
25947045 |
----gatcattcttgctttcaaaaccctgtggtattcgacgtcgt--ttatttaattcttcttgtccagaaatttaaatttgcagtttctaagggctttg |
25947138 |
T |
|
| Q |
296 |
atccagaca |
304 |
Q |
| |
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||||||||| |
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| T |
25947139 |
atccagaca |
25947147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 29118938 - 29119023
Alignment:
| Q |
72 |
ttgttgtaatttttgcataattggcaaattcatccaggctgaatatgtttgcgactatattcttggtggtgaatttaatggatccag |
158 |
Q |
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||||||||||||||||||||||| |||| | || || ||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
29118938 |
ttgttgtaatttttgcataattgacaaacttatacaagctgaatatgttt-tgactatattcttggtggtgaacctaatggatccag |
29119023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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