View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_low_15 (Length: 256)
Name: NF1928_low_15
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15517115 - 15517351
Alignment:
| Q |
1 |
acaattagcattttccttacaataatattcctctactcctctatcacatagatcatatttttaccaggcttagatagagttctccaatagtaggttgagt |
100 |
Q |
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| T |
15517115 |
acaataagcattttccttacaataatattcctctactcctctatcacatagatcatatttttaccaggcttagatagagttctccaatagtaggttgagt |
15517214 |
T |
|
| Q |
101 |
aaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaaggaaactattgaaatgcaactaggaatccacatcgaaccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
15517215 |
aaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattggaaggaaagaaaatattgaaatgcaactaggaatccacatcgaaccatg |
15517314 |
T |
|
| Q |
201 |
gtagtatgttatgaagaaggaactgctgagtgctacc |
237 |
Q |
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|||| | |||||||||||||||||||| ||||||||| |
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| T |
15517315 |
gtagaaggttatgaagaaggaactgctaagtgctacc |
15517351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 15533634 - 15533862
Alignment:
| Q |
9 |
cattttccttacaataatattcctctactcctctatcaca--tagatcatatttttaccaggcttagatagagttctccaatagtaggttgagtaaatga |
106 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||| |
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| T |
15533634 |
cattttccttgcaataatattcctctactcctctatcacacataaatcatatttttaccaggtttaaacagagtcctccaatagtaggttgagtaaatga |
15533733 |
T |
|
| Q |
107 |
tatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaaggaaactattgaaatgcaactaggaatccacatcgaaccatggtagta |
206 |
Q |
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| T |
15533734 |
tatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaaagaaaatattgaaatgcaactaggaatccacatcgaaccatggtagta |
15533833 |
T |
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| Q |
207 |
tgttatgaagaaggaactgctgagtgcta |
235 |
Q |
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| T |
15533834 |
tgttatgaagaaggaactgctaagtgcta |
15533862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 15493306 - 15493510
Alignment:
| Q |
18 |
tacaataatattcctctactcctctatcacatagatcatatttttaccaggcttagatagagttctccaatagtaggttgagtaaatgatatctgaaaac |
117 |
Q |
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|||||||||| ||||||||| ||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
15493306 |
tacaataataatcctctacttctctagtacataaatcatatttttaccaagcttagatagagtcttccaatagtaggttgagtaaatgatatcagaaaac |
15493405 |
T |
|
| Q |
118 |
aatgaaaattgcaaacctatgtacaaaagtattgggaggaaggaaactattgaaatgcaactaggaatccacatcgaaccatggtagtatgttatgaaga |
217 |
Q |
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| T |
15493406 |
aatttaaattgcaaacgtatatacaaaagtattgggaggaaggaaagtattgtaatgcaactaggaatccacatcgaaccatggtagtatattatgaaga |
15493505 |
T |
|
| Q |
218 |
aggaa |
222 |
Q |
| |
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||||| |
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| T |
15493506 |
aggaa |
15493510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 15654089 - 15654299
Alignment:
| Q |
9 |
cattttccttacaataatattcctctactcctctatcacatagatcatatttttaccaggcttagatagagttctccaatagtaggttgagtaaatgata |
108 |
Q |
| |
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|||||| |||||||||||| ||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
15654089 |
catttttcttacaataataatccactacttctctagtacataaatcatatttttaccaggcttagatagagtactccagtagtatgttgagtaaatgata |
15654188 |
T |
|
| Q |
109 |
tctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaaggaaactattgaaatgcaactaggaatccacatcgaaccatggtagtatg |
208 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| || ||||||| ||| ||||| ||||||| |||||||||||||| |
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| T |
15654189 |
tctgaaaacaacgaaaattgcaaacatatgtacaaaagtattgggaggaaagaaaatactgaaatgaaaccaggaacccacatcaaaccatggtagtata |
15654288 |
T |
|
| Q |
209 |
ttatgaagaag |
219 |
Q |
| |
|
|||||||||| |
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|
| T |
15654289 |
ctatgaagaag |
15654299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 15591667 - 15591847
Alignment:
| Q |
57 |
atttttaccaggcttagatagagttctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggagg |
156 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| || |||||||||| |||||| ||||||||||||||| |
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| T |
15591667 |
atttttacgaggcttagatagagtcctccaatagtagattgagtaaatgatatctgacaacaaggagaattgcaaacttatgtagaaaagtattgggagg |
15591766 |
T |
|
| Q |
157 |
aaggaaactattgaaatgcaactaggaatccacatcgaaccatggtagtatgttatgaagaaggaactgctgagtgctacc |
237 |
Q |
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| T |
15591767 |
aaggaaataattgaaatgcaactaggaacccacaccgaagcatggtagtatattatgaagaaggaactactaaatgctacc |
15591847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 15624413 - 15624622
Alignment:
| Q |
9 |
cattttccttacaataatattcctctactcctctatcacatagatcatatttttaccaggcttagatagagttctccaatagtaggttgagtaaatgata |
108 |
Q |
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|||||||||| ||| |||| ||| ||||| ||||| ||||| ||||||||||||||| | ||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
15624413 |
cattttcctt-caacaataatccactacttctctagtacataaatcatatttttaccatggttagacagagtcctccaatagtaggttgagttaatgata |
15624511 |
T |
|
| Q |
109 |
tctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaaggaaactattgaaatgcaactaggaatccacatcgaaccatggtagtatg |
208 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |||| |||| | || ||||||||||| ||||| |
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| T |
15624512 |
tctgaaaacaacgaaaattgcaaacctatgtacaaaggtattgggaggaaagaaaatattgaaatgaaactgggaaccaacgtcgaaccatggaagtata |
15624611 |
T |
|
| Q |
209 |
ttatgaagaag |
219 |
Q |
| |
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||||||||||| |
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| T |
15624612 |
ttatgaagaag |
15624622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 15645061 - 15645235
Alignment:
| Q |
33 |
ctactcctctatcacatagatcatatttttaccaggcttagatagagttctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaa |
132 |
Q |
| |
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||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||| |
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| T |
15645061 |
ctacttctctagtacataaatcatatttttaccaggcttagacagagtcctccaatagtagattgagttaatgatatctgaaaacagtgaaaattgcaaa |
15645160 |
T |
|
| Q |
133 |
cctatgtacaaaagtattgggaggaaggaaactattgaaatgcaactaggaatccacatcgaaccatggtagtat |
207 |
Q |
| |
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|||||||||||||||||||||||||| |||| || ||||||| ||| ||||| |||| ||||||||||||||||| |
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| T |
15645161 |
cctatgtacaaaagtattgggaggaaagaaaatactgaaatgaaaccaggaacccacgtcgaaccatggtagtat |
15645235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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