View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_low_16 (Length: 254)
Name: NF1928_low_16
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 15517057 - 15516814
Alignment:
| Q |
1 |
caaatcatatatcactcaatctcccatgtatgatcagcagaatctgattagtcaaatatcctatcattaattgttttttgttaaattaaagtggtaatgt |
100 |
Q |
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| T |
15517057 |
caaatcatatatcactcaatctcccatgtatgatcagcagaatctgattagtcaaatatcctatcattaattgttttttgttaaattaaagtggtaatgt |
15516958 |
T |
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| Q |
101 |
attttttgaattgtttctagaagtgttgacgttttattacattatggaataatgtagcttctatatttgttcttccttataagggagctttagtctattt |
200 |
Q |
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| T |
15516957 |
attatttgaattgtttctagaagtgttgacgttttattacattatggaataatgtagcttctatatttgttcttccttataagggagctttagtctattt |
15516858 |
T |
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| Q |
201 |
aattggtgtgaatatattttaaacttttatctcctcatcctatg |
244 |
Q |
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| T |
15516857 |
aattggtgtgaatatattttaaaattttatctcctcatcctatg |
15516814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 15533523 - 15533430
Alignment:
| Q |
66 |
attaattgttttttgttaaattaaagtggtaatgtattttttgaattgtttctagaagtgttgacgttttattacattatggaataatgtagct |
159 |
Q |
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| T |
15533523 |
attaattgttttttctaaaattaaagtggtaatgtattatttgaagtgtttctaaaagtgttgatgttagataacattatagaataatgtagct |
15533430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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