View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_low_17 (Length: 250)
Name: NF1928_low_17
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_17 |
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| [»] scaffold1585 (1 HSPs) |
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| [»] scaffold1696 (1 HSPs) |
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Alignment Details
Target: scaffold1585 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1585
Description:
Target: scaffold1585; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 556 - 425
Alignment:
| Q |
90 |
aatatctaaagagtatcttgggcattaattaaggatggattatacggtgagggttcaattaagtccatcaccaattgaccattattaagaggggtccgat |
189 |
Q |
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| T |
556 |
aatatctaaagagtatcttgggcattaattaaggatggattatacggtgagagtccaattaagtccatcaccggtggaccactattaagaggtatcaaat |
457 |
T |
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| Q |
190 |
tcatcaaattaaacacatcttgttctacaccg |
221 |
Q |
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| T |
456 |
taatcaaattaaatacatcttgttctacaccg |
425 |
T |
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Target: scaffold1696 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold1696
Description:
Target: scaffold1696; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 373 - 456
Alignment:
| Q |
1 |
tttttgtcacctgcactgtttatctacactagacacttgcatcgctttcaacaccctctcattctttttcttaaacaaaaataa |
84 |
Q |
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| T |
373 |
tttttgtcgcctgcactgtttatctatactagacacttccatcgctttcaacaccctttcattctttttcttaaaaaaaaataa |
456 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 15287569 - 15287664
Alignment:
| Q |
125 |
tggattatacggtgagggttcaattaagtccatcaccaattgaccattattaagaggggtccgattcatcaaattaaacacatcttgttctacacc |
220 |
Q |
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| T |
15287569 |
tggattctagggtgagggtccaattaagtccctcaccggtggaccactattaagaggcgtcagattaatcaaattacacacatcttgttgtacacc |
15287664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 9831298 - 9831213
Alignment:
| Q |
135 |
ggtgagggttcaattaagtccatcaccaattgaccattattaagaggggtccgattcatcaaattaaacacatcttgttctacacc |
220 |
Q |
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| T |
9831298 |
ggtgagggtccaattaagtccctcactggtggaccactattaagaggcgtcagattaatcaaattacacacatcttgttgtacacc |
9831213 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 46491012 - 46491049
Alignment:
| Q |
125 |
tggattatacggtgagggttcaattaagtccatcacca |
162 |
Q |
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| T |
46491012 |
tggattgtagggtgagggttcaattaagtccatcacca |
46491049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 3314957 - 3314993
Alignment:
| Q |
125 |
tggattatacggtgagggttcaattaagtccatcacc |
161 |
Q |
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| T |
3314957 |
tggattctacggtgagggttcaattaagtccctcacc |
3314993 |
T |
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