View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1928_low_19 (Length: 243)
Name: NF1928_low_19
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 12119602 - 12119392
Alignment:
| Q |
18 |
agatgcaccacgacacgggttctttgcttgtgtaatctctcccacaaggtttgatactttgatacctcattgtagatttagtattcatataattcaattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12119602 |
agatgcaccacgacacgggttctttgcttgtgtaatctctcccacaaggtttgatacttcgatacgtcattgtagatttagtattcatataattcaattt |
12119503 |
T |
|
| Q |
118 |
--tattagattaatttttaacgtcccgcttttaggattgcggaccgaccccacttcc---cagaaggtcatccatccaaatattacgctaagtcaagcac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||||||||||| ||||||| |||||||||||||| || ||||| ||||||| |
|
|
| T |
12119502 |
tatattagattaatttttaacgtcccgctttcaggattgccgatcgaccccacttcctagaagaaggttatccatccaaatatcactctaaggcaagcac |
12119403 |
T |
|
| Q |
213 |
acttaactatg |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
12119402 |
gtttaactatg |
12119392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 14690811 - 14690715
Alignment:
| Q |
43 |
gcttgtgtaatctctcccacaaggtttgatactttgatacctcattgtagatttagtattcatataattcaattttattagattaatttttaacgtc |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
14690811 |
gcttgtgtaatctctcccacaaggtttgatactttgatacctgatcatagatttaatattcatataattcaattttgtccgattaatttgtaacgtc |
14690715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 20524773 - 20524700
Alignment:
| Q |
40 |
tttgcttgtgtaatctctcccacaaggtttgatactttgatacctcattgtagatttagtattcatataattca |
113 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||||||| || || | |||||| ||||||||||||||| |
|
|
| T |
20524773 |
tttgcatgtgtgatgtctcccacaaggttagatactttgataactgatcatggatttaatattcatataattca |
20524700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 25182557 - 25182504
Alignment:
| Q |
167 |
acttcccagaaggtcatccatccaaatattacgctaagtcaagcacacttaact |
220 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| | ||||||| ||||||||||| |
|
|
| T |
25182557 |
acttcccagaaggtcctccatccaaagactactccaagtcaaacacacttaact |
25182504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 23986267 - 23986320
Alignment:
| Q |
167 |
acttcccagaaggtcatccatccaaatattacgctaagtcaagcacacttaact |
220 |
Q |
| |
|
|||||||||||||||| |||||| || ||| | | ||||||||||||||||||| |
|
|
| T |
23986267 |
acttcccagaaggtcacccatcccaaaattgctccaagtcaagcacacttaact |
23986320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 30643340 - 30643416
Alignment:
| Q |
37 |
ttctttgcttgtgtaatctctcccacaaggtttgatactttgatacctcattgtagatttagtattcatataattca |
113 |
Q |
| |
|
|||||||| || || || |||||||||||||| ||||||| |||| || || | |||||| ||||||||||||||| |
|
|
| T |
30643340 |
ttctttgcatgcgtgatgtctcccacaaggttagatacttcgataactgatcatggatttaatattcatataattca |
30643416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 3804350 - 3804391
Alignment:
| Q |
182 |
atccatccaaatattacgctaagtcaagcacacttaactatg |
223 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3804350 |
atccatccaaatattactctaagtcagacacacttaactatg |
3804391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 26436082 - 26436130
Alignment:
| Q |
175 |
gaaggtcatccatccaaatattacgctaagtcaagcacacttaactatg |
223 |
Q |
| |
|
|||||||| ||||||||||| ||| |||| ||||| ||||||||||||| |
|
|
| T |
26436082 |
gaaggtcacccatccaaatactactctaattcaagaacacttaactatg |
26436130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University