View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1928_low_2 (Length: 575)
Name: NF1928_low_2
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 29 - 565
Target Start/End: Complemental strand, 35929626 - 35929089
Alignment:
| Q |
29 |
ctctcagaaactgtgatgaagatacagtacaactgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcaca |
128 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929626 |
ctctcataaactgtgatgaagatacagtacaagtgcataaacggcaacaataagttagaggacaaaatatatttatcattaagtttaaaagttaatcaca |
35929527 |
T |
|
| Q |
129 |
aagtgctaaattgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatattaaatcagccggctga |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929526 |
aagtgctaaattgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatattaaatcagccggctga |
35929427 |
T |
|
| Q |
229 |
tcattgcctggtcaatactagtgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatc |
328 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929426 |
tcattgcctggtcaatactaatgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatc |
35929327 |
T |
|
| Q |
329 |
tataaatagatagaaactaagatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttgg |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929326 |
tataaatagatagaaactaagatatatggaaaccaagttgagaataagatgaagaaggtttctctttatgcttgtttactactcagcgtgagttttttgg |
35929227 |
T |
|
| Q |
429 |
ttattttt-catatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaaga |
527 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929226 |
ttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaaga |
35929127 |
T |
|
| Q |
528 |
ggaagatgcatctaaaacagattcttctgctccctatg |
565 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35929126 |
ggaagatgcatctaaaacagattcttctgctccttatg |
35929089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 31 - 555
Target Start/End: Complemental strand, 35936274 - 35935742
Alignment:
| Q |
31 |
ctcagaaactgtgatgaagatacagtacaactgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcacaaa |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||| ||| ||||| |||||| ||| ||||||||| ||||| |
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| T |
35936274 |
ctcagaaactagaatgaagatacagtacaactgcatcaaccacaacaataagttagaggaaaaagtatat----cattaactttcaaagttaatgacaaa |
35936179 |
T |
|
| Q |
131 |
gtgctaaattgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatattaaatc-agccggctgat |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||| |||||||||| ||||||||||| |||||||| |||||||| |||||| | ||||||||||| |
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|
| T |
35936178 |
gtgctaaattgttaaataacttgttatgattctacaaacagggaaacaaagacaatccattgcattcaagaagaaactaaattaaaaccagccggctgat |
35936079 |
T |
|
| Q |
230 |
cattgcctggtca-------atactagtgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttt |
322 |
Q |
| |
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| |||| |||||| ||| || ||| ||| |||||||||||||||||||| |||||| ||||||||||||| | | || | | |||||||| |
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| T |
35936078 |
c-ttgcatggtcagtagtcaatagtaatgttatcacactcttgtttctttcacatgc-tccaacaacaacaaaacaagtcatgcaaaattgccactgttt |
35935981 |
T |
|
| Q |
323 |
tgtatctataaatag----ata-gaaactaagatatatggaaa-ccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcg |
416 |
Q |
| |
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| ||||||||||||| ||| |||||| || ||||| ||| |||| || |||| |||||| |||| |||||||||||||||||||| |||||| | |
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|
| T |
35935980 |
tttatctataaatagtaagataagaaacttag-tatatacaaaaccaacttaagaacaagatgaagaaaatttctctttatgcttgtttattactcaact |
35935882 |
T |
|
| Q |
417 |
tgagttttttggttatttttcat-atagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactct |
515 |
Q |
| |
|
||||| | ||||||||||||| | ||||||||||||||||| ||||||||||||||||| || |||| ||||||| |||||||||||||| |||||||| |
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|
| T |
35935881 |
tgagtctcttggttatttttccttatagcaaagctagtcaagctgataaacttgatgagctttttctgtctagaaaatcacagaatcctcccaagactct |
35935782 |
T |
|
| Q |
516 |
ttcttgggaagaggaagatgcatctaaaacagattcttct |
555 |
Q |
| |
|
|||||||||||||| ||| |||| |||||| ||||||| |
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|
| T |
35935781 |
ttcttgggaagagggagaagcattgaaaacactttcttct |
35935742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 315 - 554
Target Start/End: Complemental strand, 35912013 - 35911772
Alignment:
| Q |
315 |
cactgttttgtatctataaatagatagaaactaa-gatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactca |
413 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
35912013 |
cactgtttttcatctataaatagttagaaacttatgatatattgaagccaagttgagaacaagatgaagaaggtttctctttatgcttgtttactactca |
35911914 |
T |
|
| Q |
414 |
gcgtgagttttttggttatttttc-atatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagac |
512 |
Q |
| |
|
| ||||| | ||||||||||||| |||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
35911913 |
acttgagtctattggttatttttccatattgcaaagctagtcaagctgataaacttgttgagtttattctgtctagaacctcacagaatcctcctaagac |
35911814 |
T |
|
| Q |
513 |
tctttcttgggaagaggaagatgcatctaaaacagattcttc |
554 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
35911813 |
tctttcatgggaagaggaagatgcattgaaaacacattcttc |
35911772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 105 - 553
Target Start/End: Complemental strand, 35916641 - 35916160
Alignment:
| Q |
105 |
cattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatcc-----attacattcaa |
199 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
35916641 |
cattaactttcaaagttaatcacaaagtgctaaaacgttaaataacttgatatgattctagaaaaagggaaacaatgacaatcccttacattacattcaa |
35916542 |
T |
|
| Q |
200 |
ggagaa---actatattaaatc-agccggctgatcattgcctgg---------------tcaatactag-tgtcatcgttctcttgtttctttcacatgc |
279 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||| ||| ||| ||||| ||| ||| ||| |||||||||||||||||||| |
|
|
| T |
35916541 |
ggagaagaaactaaattaaacatagccggctgatcaatgcatggacattggtcaatgcctcaatggtagatgttatctctctcttgtttctttcacatgg |
35916442 |
T |
|
| Q |
280 |
ctccaaccacaacaa---aacaagccctaaaatactttcactgttttgtatctataaatagatagaaactaa-gatatatggaaaccaagttgagaataa |
375 |
Q |
| |
|
||||||| | ||||| || ||| ||| || | | ||| |||||| |||||||||||| |||||||| | ||||||| |||||||||||||||| || |
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|
| T |
35916441 |
ctccaacaagaacaaccaaataagtccttcaaaattgtcaatgtttttcatctataaatagttagaaacttatgatatattgaaaccaagttgagaacaa |
35916342 |
T |
|
| Q |
376 |
gatggagaaggtttctctttatgcttgtttactactcagcgtga---gttttttggttatttttc-atatagcaaagctagtcaaactgataaacttgat |
471 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| ||| || ||||||||||||||| ||||||||||||||||||| |||||||||| || |
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|
| T |
35916341 |
gatgaagaaggtttctctttatgcttgtttattactcaatttgatcagtcttttggttatttttccatatagcaaagctagtcaagctgataaactcaat |
35916242 |
T |
|
| Q |
472 |
gagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattctt |
553 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
35916241 |
gagtttattctgtctagaaaatctcagaatcctcctaagacactttcttgggaagagggagatgcattgaaaacacattctt |
35916160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 351 - 538
Target Start/End: Complemental strand, 35941497 - 35941309
Alignment:
| Q |
351 |
tatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttc-atatagcaaagc |
449 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
35941497 |
tatatagaaatcaagttgagaacaagatggagaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagc |
35941398 |
T |
|
| Q |
450 |
tagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcat |
538 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
35941397 |
tagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcat |
35941309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 326 - 553
Target Start/End: Complemental strand, 35922658 - 35922429
Alignment:
| Q |
326 |
atctataaatagatagaaactaa-gatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagtttt |
424 |
Q |
| |
|
|||||||||| | |||||||| | ||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| | |||| || |
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|
| T |
35922658 |
atctataaattgttagaaacttatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctctttatgcttgtttattactcaacttgagcctt |
35922559 |
T |
|
| Q |
425 |
ttggttatttttc-atatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttggg |
523 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||||| || ||||||||||| ||||| |||||||||| |
|
|
| T |
35922558 |
ttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcccaagacactttcttggg |
35922459 |
T |
|
| Q |
524 |
aagaggaagatgcatctaaaacagattctt |
553 |
Q |
| |
|
|||||| |||||||| |||||| |||||| |
|
|
| T |
35922458 |
aagagggagatgcattgaaaacacattctt |
35922429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 35922909 - 35922772
Alignment:
| Q |
60 |
actgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgat---a |
156 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||||| |||||| ||| ||||||||||||||||| ||||||| ||||||| |||||| | |
|
|
| T |
35922909 |
actgcataaaccacaacaataagttagaggaacaaatatat----cattaactttcaaagttaatcacaaagttctaaattattaaataccttgatacca |
35922814 |
T |
|
| Q |
157 |
tgtgtctagaaaaagggaaacaaggacaatccattacattca |
198 |
Q |
| |
|
|| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
35922813 |
tgattctagaaaaagggaaacaaggaaaatcacttacattca |
35922772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 35912219 - 35912129
Alignment:
| Q |
105 |
cattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgat--atgtgtctagaaaaagggaaacaaggacaatccattac |
193 |
Q |
| |
|
|||||| ||| ||||||||||||| ||| ||||| |||||||||||||||| ||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
35912219 |
cattaactttcaaagttaatcacatagtactaaaatgttaaataacttgatacatgattctagaaaaacggaaacaagaacaatccattac |
35912129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 35941721 - 35941632
Alignment:
| Q |
116 |
aaagttaatcacaaagtgctaaattgttaaataacttgat--atgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaa |
205 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| || | ||||||||||||||||| |
|
|
| T |
35941721 |
aaagttaattacaaagtgctaaattgttaaataacttgatacatgattctagaaaaaggaaaacaag--aaaacaattacattcaaggagaa |
35941632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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