View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_low_20 (Length: 235)
Name: NF1928_low_20
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_20 |
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| [»] scaffold1696 (1 HSPs) |
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Alignment Details
Target: scaffold1696 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold1696
Description:
Target: scaffold1696; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 224 - 99
Alignment:
| Q |
24 |
aaatcgcataatactaatccataaattaatcgattatcacacccaaacatggccttacgcaggagaactttactcaaagttatcgttcttggagacagtg |
123 |
Q |
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| T |
224 |
aaatctcataatactaatccataaattaatcgattatcacacccaaacatggccttacgcagaagaactttactcaaagttatcgttcttggagacagtg |
125 |
T |
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| Q |
124 |
ggtacgttcgtaatccataaacttca |
149 |
Q |
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|||||||||||||| |||||||||| |
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| T |
124 |
ggtacgttcgtaatttataaacttca |
99 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 14294863 - 14294815
Alignment:
| Q |
82 |
gcaggagaactttactcaaagttatcgttcttggagacagtgggtacgt |
130 |
Q |
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|||| ||||| || ||||||||||||||||| ||||||||||||||||| |
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| T |
14294863 |
gcagaagaacattgctcaaagttatcgttctaggagacagtgggtacgt |
14294815 |
T |
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