View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1928_low_21 (Length: 225)

Name: NF1928_low_21
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1928_low_21
NF1928_low_21
[»] chr8 (13 HSPs)
chr8 (14-184)||(19288442-19288612)
chr8 (14-184)||(19171582-19171753)
chr8 (78-184)||(19397997-19398103)
chr8 (78-184)||(19414353-19414459)
chr8 (27-184)||(19346988-19347144)
chr8 (80-185)||(19377678-19377783)
chr8 (78-158)||(19338214-19338294)
chr8 (78-183)||(19406127-19406229)
chr8 (78-156)||(19356241-19356319)
chr8 (78-184)||(19552779-19552885)
chr8 (78-184)||(19579803-19579909)
chr8 (78-184)||(19453065-19453168)
chr8 (78-184)||(19527908-19528011)
[»] chr1 (1 HSPs)
chr1 (84-184)||(36312791-36312891)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 19288612 - 19288442
Alignment:
Q  14 caaagggaatgagtttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaagg 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19288612 caaagggattgagtttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaagg 19288513  T
Q  114 agtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19288512 agtgggcataatatgagtatagcagctgctattgcagcacctatcaatatccacctgtttttacctgcatt 19288442  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 19171582 - 19171753
Alignment:
Q  14 caaagggaatgagtttagtaaatat-gtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaag 112  Q
    |||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||  | ||| |||||||    
T  19171582 caaagggaatgagtttcgtaaatatcgtactaaactatatttgaaatatccaagtacctttacgtgcatatttttgtttctttttcgcgacaaataaaag 19171681  T
Q  113 gagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 184  Q
     ||||||||||||| |||||||||||||||||||||| |||| ||| | |||| | || |||||||||||||    
T  19171682 aagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccgcatgcttttacctgcatt 19171753  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 19398103 - 19397997
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 177  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| ||||| ||| ||||||||||||||| |  ||||||| ||| |||    
T  19398103 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagcagttgcaattgcagcacctatccatttccacctttttatac 19398004  T
Q  178 ctgcatt 184  Q
    |||||||    
T  19398003 ctgcatt 19397997  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 19414459 - 19414353
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 177  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| ||||| ||  ||||||||||||||| | |||||||| ||| |||    
T  19414459 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagcagttgtaattgcagcacctatccatatccacctttttatac 19414360  T
Q  178 ctgcatt 184  Q
    |||||||    
T  19414359 ctgcatt 19414353  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 19347144 - 19346988
Alignment:
Q  27 tttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaaggagtgggcataata 126  Q
    ||||||| || || |||| ||||| |||||||||||||  |||||| | | ||||||||||||||| ||||| |||  ||||||| || |||||| ||||    
T  19347144 tttagtacatttgaactagactat-tttgaagtatccatataccttgaagtgcatatttttgtttctttttggctaagcataaaatgattgggcaaaata 19347046  T
Q  127 tgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 184  Q
    |||||| ||||||||| |||| || |  |||| | |||||| | ||||||||||||||    
T  19347045 tgagtaaagcagctgcgattgtagaagttatccatatccacttttttttacctgcatt 19346988  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 19377783 - 19377678
Alignment:
Q  80 atatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacct 179  Q
    ||||||||||||| ||||| |||  |||| || |||||||||||||||||||| ||||| | | |||||| |||||||| | |||||| | |||||||||    
T  19377783 atatttttgtttctttttggctagccatataatgagtgggcataatatgagtaaagcagttccgattgcaacacctatccatatccacttttttttacct 19377684  T
Q  180 gcattt 185  Q
    ||||||    
T  19377683 gcattt 19377678  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 19338294 - 19338214
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatc 158  Q
    ||||||||||||||| ||||| |||   |||||| |||||||||||||||||||| ||||| ||| |||||||||||||||    
T  19338294 gcatatttttgtttctttttggctaggaataaaatgagtgggcataatatgagtaaagcagttgcgattgcagcacctatc 19338214  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 19406229 - 19406127
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 177  Q
    |||||||||||  || |||| ||||  ||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19406229 gcatatttttgaatcttttttactaggcataaaacgagtggacataatatgagtatagcagatgcgattgcagcacctatccatatccac---tttttac 19406133  T
Q  178 ctgcat 183  Q
    ||||||    
T  19406132 ctgcat 19406127  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 19356319 - 19356241
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcaccta 156  Q
    ||||||||||||||| ||||| |||  ||||||| |||||||||||||||||||| || || ||| |||||||||||||    
T  19356319 gcatatttttgtttctttttggctaggcataaaatgagtgggcataatatgagtaaagaagttgcgattgcagcaccta 19356241  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 19552779 - 19552885
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 177  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| || || ||| |||||||||| |||| | |||||||  ||| |||    
T  19552779 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagtagttgcaattgcagcacatatccatatccaccattttatac 19552878  T
Q  178 ctgcatt 184  Q
    |||||||    
T  19552879 ctgcatt 19552885  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 19579909 - 19579803
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 177  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| || || ||| |||||||||| |||| | |||||||  ||| |||    
T  19579909 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagtagttgcaattgcagcacatatccatatccaccattttatac 19579810  T
Q  178 ctgcatt 184  Q
    |||||||    
T  19579809 ctgcatt 19579803  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 19453168 - 19453065
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 177  Q
    |||||||||||  || |||| ||||  |||||||||||||| |||| |||||| | ||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19453168 gcatatttttgaatcttttttactaggcataaaaggagtggacatagtatgagcagagcagatgcgattgcagcacctatccatatccac---tttttac 19453072  T
Q  178 ctgcatt 184  Q
    |||||||    
T  19453071 ctgcatt 19453065  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 19527908 - 19528011
Alignment:
Q  78 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 177  Q
    |||||||||||  || |||| ||||  |||||||||||||| |||| |||||| | ||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19527908 gcatatttttgaatcttttttactaggcataaaaggagtggacatagtatgagcagagcagatgcgattgcagcacctatccatatccac---tttttac 19528004  T
Q  178 ctgcatt 184  Q
    |||||||    
T  19528005 ctgcatt 19528011  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 36312791 - 36312891
Alignment:
Q  84 ttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcat 183  Q
    |||| |||| ||||| |||  ||||||| ||| ||| | |||||||||| ||||| ||| ||||||||| ||||  | ||||| || |||||||||||||    
T  36312791 ttttttttctttttggctatgcataaaatgagcgggaacaatatgagtaaagcagttgcgattgcagcagctattcatatccatctttttttacctgcat 36312890  T
Q  184 t 184  Q
    |    
T  36312891 t 36312891  T

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