View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1928_low_7 (Length: 400)

Name: NF1928_low_7
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1928_low_7
NF1928_low_7
[»] chr5 (3 HSPs)
chr5 (135-215)||(39998604-39998684)
chr5 (17-83)||(8715884-8715950)
chr5 (133-179)||(35272056-35272102)
[»] chr6 (2 HSPs)
chr6 (130-186)||(1825500-1825556)
chr6 (31-83)||(16389341-16389393)
[»] chr4 (4 HSPs)
chr4 (20-68)||(909018-909066)
chr4 (131-185)||(30610241-30610295)
chr4 (137-199)||(49999539-49999600)
chr4 (31-83)||(10129756-10129808)
[»] chr8 (1 HSPs)
chr8 (134-199)||(35751596-35751660)
[»] chr3 (1 HSPs)
chr3 (31-83)||(30911737-30911789)


Alignment Details
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 39998604 - 39998684
Alignment:
Q  135 tgagaatgattataaaccattagattgaaaatagaaggtttagattaaaaagatccattaaatgataacgtggacatcaga 215  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||    
T  39998604 tgagaatgattatcaaccattagattgaaaatagaaggcttagattaaaaggatccaataaaggataacgtggacatcaga 39998684  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 8715884 - 8715950
Alignment:
Q  17 tgctattaagtgacgactaattaattctagaagattggtgactcgttagtttgtttggaagaatcta 83  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8715884 tgctattaagtggcgactaattaattctagaagattggtgactcgttggtttgtttggaagaatcta 8715950  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 35272056 - 35272102
Alignment:
Q  133 tatgagaatgattataaaccattagattgaaaatagaaggtttagat 179  Q
    |||||||||||||||||||||||||||  |||||||| |||| ||||    
T  35272056 tatgagaatgattataaaccattagatctaaaatagatggttaagat 35272102  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 1825556 - 1825500
Alignment:
Q  130 ttatatgagaatgattataaaccattagattgaaaatagaaggtttagattaaaaag 186  Q
    |||||||||||||||||| |||||||||||| |||||| | |||| | |||||||||    
T  1825556 ttatatgagaatgattatcaaccattagattcaaaataaatggttgacattaaaaag 1825500  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 16389393 - 16389341
Alignment:
Q  31 gactaattaattctagaagattggtgactcgttagtttgtttggaagaatcta 83  Q
    |||| |||| ||||||||||||||||||||  ||||||||| ||||| |||||    
T  16389393 gactcattagttctagaagattggtgactcactagtttgttaggaaggatcta 16389341  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 909018 - 909066
Alignment:
Q  20 tattaagtgacgactaattaattctagaagattggtgactcgttagttt 68  Q
    |||||||||| |||| |||||||||| ||||||||||||||| ||||||    
T  909018 tattaagtgatgactcattaattctaaaagattggtgactcgctagttt 909066  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 30610295 - 30610241
Alignment:
Q  131 tatatgagaatgattataaaccattagattgaaaatagaaggtttagattaaaaa 185  Q
    |||||||||||||||||  ||||||||||  |||||||| |||| ||||||||||    
T  30610295 tatatgagaatgattatccaccattagatcaaaaatagatggttgagattaaaaa 30610241  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 49999600 - 49999539
Alignment:
Q  137 agaatgattataaaccattagattgaaaatagaaggtttagattaaaaagatccattaaatga 199  Q
    |||||||||||  ||||||||||| |||||||| || ||| ||| ||||||||||||||||||    
T  49999600 agaatgattatggaccattagattaaaaatagatggcttatatt-aaaagatccattaaatga 49999539  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 10129808 - 10129756
Alignment:
Q  31 gactaattaattctagaagattggtgactcgttagtttgtttggaagaatcta 83  Q
    |||| |||| ||||||||||||||||||||  ||||||||| ||||| |||||    
T  10129808 gactcattagttctagaagattggtgactcactagtttgttaggaaggatcta 10129756  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 35751660 - 35751596
Alignment:
Q  134 atgagaatgattataaaccattagattgaaaatagaaggtttagattaaaaagatccattaaatga 199  Q
    ||||||||||||||  || |||||||| |||||||| || ||| ||| ||||||||||||||||||    
T  35751660 atgagaatgattatggactattagattaaaaatagatggcttatatt-aaaagatccattaaatga 35751596  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 30911789 - 30911737
Alignment:
Q  31 gactaattaattctagaagattggtgactcgttagtttgtttggaagaatcta 83  Q
    |||| |||| ||||||||||||||||||||  ||||||||| ||||| |||||    
T  30911789 gactcattagttctagaagattggtgactcactagtttgttaggaaggatcta 30911737  T

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