View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1928_low_9 (Length: 362)
Name: NF1928_low_9
Description: NF1928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1928_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 49252125 - 49252476
Alignment:
| Q |
1 |
ataatacttttaaacattgaatgtatcgatgcaaaataatactaaatgtattaaattattctataaattatagttaatactattaggttgattattcatg |
100 |
Q |
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| T |
49252125 |
ataatacttttaaacactgaatgtatcgatgcaaaataatactaaatgtattaaattattctataaattatagttaatactattaggttgattattaatg |
49252224 |
T |
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| Q |
101 |
taaaacaatcatgaaagatgcttggatcaaacccagagccaattttatgaaatgcaatattgatgcctctttttgtcacactcacaacatggtgggaatt |
200 |
Q |
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| T |
49252225 |
tagaacaatcatgaaagatgcttggatcaaacccagagccaattttatgaaatgcaatattgatgcctctttttgtcacactcacaacatggtgggaatt |
49252324 |
T |
|
| Q |
201 |
ggcattttaattcgtgatgatcgtggccattttgtccaagccaaaactatccaagttacacctcttttagaggttcaagaaggaaaggctaagggtctct |
300 |
Q |
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| T |
49252325 |
ggcattttaattcgtgatgatcgtggccattttgtccaagccaaaactatccaagttacacctcttttacaggttcaagaaggaaaggctaagggtctct |
49252424 |
T |
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| Q |
301 |
tacatgctatgaattgggttattgagttgggtatggttaatgttgtttttga |
352 |
Q |
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| T |
49252425 |
tacatgctatgaattgggttattgagttgggtatggttaatgttgtttttga |
49252476 |
T |
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