View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19290_low_1 (Length: 533)
Name: NF19290_low_1
Description: NF19290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19290_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 2017973 - 2017457
Alignment:
| Q |
1 |
ttctcaattagcactcaagtggagaaatttggtatagaaaaacaagttgtatgacaatatgtattatgagatcaagatcaaggagaaaaaggagagaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017973 |
ttctcaattagcactcaagtggagaaatttggtatagaaaaacaagttgtatgacaatatgtattatgagatcaagatcaaggagaaaaaggagagaaaa |
2017874 |
T |
|
| Q |
101 |
ctgaaatgttgattcattgatctgtaagtagatttagttacatgaatcctatttattgaacaaacaagataataggtttatttgagtagtaaggaaccgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017873 |
ctgaaatgttgattcattgatctgtaagtagatttagttacatgaatcctatttattgaacaaacaagataataggtttatttgagtagtaaggaaccgg |
2017774 |
T |
|
| Q |
201 |
ttataactaacttctattaaggctatttgtgctatctataggtgatgagctggattgttgacttgctatatcaggcgaaagcttgttttgtgtagaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017773 |
ttataactaacttctattaaggctatttgtgctatctataggtgatgagctggattgttgacttgctatatcaggcgaaagcttgttttgtgtagaaata |
2017674 |
T |
|
| Q |
301 |
ccttatttgtcatgattca-aaaatatatatcaccttatttggccttatattttacagtttacttttctttgtcttatcttcaataaatattgtgcatcc |
399 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017673 |
ccttatttgtcatgattcaaaaaatatatatcaccttatttggccttatattttacagtttacttttctttgtcttatcttcaataaatattgtgcatcc |
2017574 |
T |
|
| Q |
400 |
attaatggatattgcatgattctcagtactttctattggtgactatatatatcttttgttttgtaatgtcatgatttatcatatctgaatttctatatac |
499 |
Q |
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| T |
2017573 |
attaatggatattgcatgattctcagtactttctattggtgactatatatatcttttgttttgtaatggcatgatttatcatatctgaatttctatatac |
2017474 |
T |
|
| Q |
500 |
agcattcaccttgtata |
516 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
2017473 |
agcattcaccttgtata |
2017457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1963839 - 1963906
Alignment:
| Q |
1 |
ttctcaattagcactcaagtggagaaa-tttggtatagaaaaacaagttgtatgacaatatgtattat |
67 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1963839 |
ttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgtattat |
1963906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1969451 - 1969493
Alignment:
| Q |
1 |
ttctcaattagcactcaagtggagaaatttggtatagaaaaac |
43 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||| ||||| |
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|
| T |
1969451 |
ttctcaaatagcactcaagtggagaaatttggtgtaggaaaac |
1969493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2004190 - 2004148
Alignment:
| Q |
1 |
ttctcaattagcactcaagtggagaaatttggtatagaaaaac |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||||| |
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|
| T |
2004190 |
ttctcaattagcactcaagtggagaaatttagtgtaggaaaac |
2004148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2007570 - 2007528
Alignment:
| Q |
1 |
ttctcaattagcactcaagtggagaaatttggtatagaaaaac |
43 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||||||||| |
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|
| T |
2007570 |
ttctcaaatagcacttaagtggagaaatttggtgtagaaaaac |
2007528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2011185 - 2011143
Alignment:
| Q |
1 |
ttctcaattagcactcaagtggagaaatttggtatagaaaaac |
43 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
2011185 |
ttctcaattaacactcaagtggagaaatttggtgcagaaaaac |
2011143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 1963911 - 1963944
Alignment:
| Q |
329 |
atcaccttatttggccttatattttacagtttac |
362 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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|
| T |
1963911 |
atcaccttatttggccttatatttcacagtttac |
1963944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2014590 - 2014529
Alignment:
| Q |
1 |
ttctcaattagcactcaagtggagaaa-tttggtatagaaaaacaagttgtatgacaatatg |
61 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| |||||||||||| ||||||||||| |
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|
| T |
2014590 |
ttctcaattagttcttaagtggagaaactttggtattgaaaaacaagtttaatgacaatatg |
2014529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5903015 - 5903047
Alignment:
| Q |
1 |
ttctcaattagcactcaagtggagaaatttggt |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5903015 |
ttctcaattagcactcaagtggagaaatttggt |
5903047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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