View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19290_low_3 (Length: 479)
Name: NF19290_low_3
Description: NF19290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19290_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 214 - 464
Target Start/End: Original strand, 33495176 - 33495426
Alignment:
| Q |
214 |
tatgcttacaatccaagaacatttttcctgattttctgaagatttgacacgagttggagaagcagctctcattgaatcaatccaagcattaactttactt |
313 |
Q |
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| T |
33495176 |
tatgcttacaatccaagaacatttttcctgattttctgaagatttgacacgagttggagaagcagctctcattgaatcaatccaagcattaactttactt |
33495275 |
T |
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| Q |
314 |
tcttctaatctcttagtaaaattcttatgagaaaaacccaaaaacccattaatcaaagccatagattctggcacggtagctgcacttggtaacacgacag |
413 |
Q |
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| T |
33495276 |
tcttctaatctcttagtaaaattcttacgagaaaaacccaaaaacccattaatcaaagccatagattctggcacggtagctgcacttggtaacaccacag |
33495375 |
T |
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| Q |
414 |
tagagataagattgttaatacatgacttaaattctggtgttactgcattat |
464 |
Q |
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| T |
33495376 |
tagagataagattgttaatacatgacttaaattctggtgttactgcattat |
33495426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 33494962 - 33495119
Alignment:
| Q |
18 |
ttttctggatcggcaacaataggtgagagagtaccatcatagtcaagaaaaaacactatctgttttccttttgcactaaacaatatttgatcaaacaatt |
117 |
Q |
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| T |
33494962 |
ttttctggatcggcaacaataggtgagagagtaccatcatagtcaagaaaaaacactatctgttttctttttgcactatacaatatttgatcaaacaatt |
33495061 |
T |
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| Q |
118 |
tcagtgctgaaggatgataaagctgcaagcacaaataataagaagtcaactaaaaatt |
175 |
Q |
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| T |
33495062 |
tcagtgctgaagggtgataaagctgcaagcacaaataataagaagtcaactaaaaatt |
33495119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 37980388 - 37980434
Alignment:
| Q |
251 |
gaagatttgacacgagttggagaagcagctctcattgaatcaatcca |
297 |
Q |
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| T |
37980388 |
gaagatttgacatgagttggagaagaagctctcatagaatcaatcca |
37980434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 26144096 - 26144144
Alignment:
| Q |
21 |
tctggatcggcaacaataggtgagagagtaccatcatagtcaagaaaaa |
69 |
Q |
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| T |
26144096 |
tctggatctgctacaattggggagagagttccatcatagtcaagaaaaa |
26144144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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