View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19290_low_4 (Length: 396)
Name: NF19290_low_4
Description: NF19290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19290_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 214 - 381
Target Start/End: Original strand, 18220719 - 18220886
Alignment:
| Q |
214 |
caagtggaaaactgaactgtgtactgnnnnnnnggttacatctttgaatacaaataaccatttacctatcagcagcccatctatcaatccatatttttgg |
313 |
Q |
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| T |
18220719 |
caagtggaaaactgaactgtgtactgaaaaaaaggttacatctttaaatacaaataaccatttacctctcagcagcccatctatcaatccatatttttgg |
18220818 |
T |
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| Q |
314 |
cttgtttcttctataaaccacaagttcctgattcttggtgtcattcactgctttctcagactttttat |
381 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18220819 |
cttgtttcttctataaaccacaagttcctgcttcttggtgtcattcactgctttctcagactttttat |
18220886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 18220518 - 18220654
Alignment:
| Q |
13 |
aacctgtgtcaccaatatactttcgtgcttctgatctcagctcttgcctcattattgagtttccatacacagctcctttttccttcataaccttcaacat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220518 |
aacctgtgtcaccaatatactttcgtgcttctgatctcagctcttgcctcattattgagtttccatacacagctcctttttccttcataaccttcaacat |
18220617 |
T |
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| Q |
113 |
gttctcctccgctaacttataccttcaaatgtacaag |
149 |
Q |
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| T |
18220618 |
gttctcctctgctaacttataccttcaaatgtacaag |
18220654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 43012294 - 43012431
Alignment:
| Q |
13 |
aacctgtgtcaccaatatactttcgtgcttctgatctcagctcttgcctcattattgagtttccatacacagctcctttttccttcataaccttcaacat |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012294 |
aacctgtgtcaccaatatactttcttgcttctgatctaagctcttgcctcattattgagtttccatacacagctcctttttccttcataaccttcaacat |
43012393 |
T |
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| Q |
113 |
gttctcctccgctaacttataccttcaaatgtacaagg |
150 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
43012394 |
gttctcctctgctaacttataccttcaaatgtacaagg |
43012431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 214 - 379
Target Start/End: Original strand, 43012495 - 43012659
Alignment:
| Q |
214 |
caagtggaaaactgaactgtgtactgnnnnnnnggttacatctttgaatacaaataaccatttacctatcagcagcccatctatcaatccatatttttgg |
313 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| || |||||| |
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| T |
43012495 |
caagtggaaaactgaactgtgtattgaaaaaa-ggttacatctatgaatacaaataaccatttacctctcagcagcccatctataaatccctagttttgg |
43012593 |
T |
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| Q |
314 |
cttgtttcttctataaaccacaagttcctgattcttggtgtcattcactgctttctcagacttttt |
379 |
Q |
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||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||| |
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| T |
43012594 |
cttgtttctgctataaaccacgagttcctgcttcttggtgtcattcactgctttcttagatttttt |
43012659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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