View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19290_low_5 (Length: 328)
Name: NF19290_low_5
Description: NF19290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19290_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 4332898 - 4333164
Alignment:
| Q |
18 |
gtaatgctgctggcattgcaggatttgttgttctaaattccaggttacttctctctctgcactttcatatgctttgtcgattattttgtgcttttaaatc |
117 |
Q |
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| T |
4332898 |
gtaatgctgctggcattgcaggatttgttgttctaaattccaggttacttctctctctgcactttcatatgctttgtcgattattttgtgcttttaaatc |
4332997 |
T |
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| Q |
118 |
aatggttttattcaggatttctaatttgtgcattgctactagttcaaatgtaattcattacttaccgttctagtgtttttaacaaactttctaatctaat |
217 |
Q |
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| T |
4332998 |
aatggttttattcaggatttctaatttgtgcattgctactagttcaaatgtaattcattacttaccgttctagtgtttttaacaaactttctaatctaat |
4333097 |
T |
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| Q |
218 |
caacacattcaaacgcaacttttgtaatgataatttattttactcaaatgtcccctctacttttgac |
284 |
Q |
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| T |
4333098 |
caacacattcaaacgcaacttttgtaatgataatttattttactcaaatgtcccctctacttttgac |
4333164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 4128934 - 4128835
Alignment:
| Q |
112 |
taaatcaatggttttattcaggatttctaatttgtgcattgctactagttcaaatgtaattcattacttaccgttctagtgtttttaacaaactttctaa |
211 |
Q |
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| T |
4128934 |
taaatcaattgttttattcgggatttataat--gtgcattgctactagttcaaatacaattaattatatatcgtcctagtgtttttaacaaactttctaa |
4128837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 4350468 - 4350509
Alignment:
| Q |
21 |
atgctgctggcattgcaggatttgttgttctaaattccaggt |
62 |
Q |
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| T |
4350468 |
atgctgctggccttgcaggatttgttgtcctgaattccaggt |
4350509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 45113485 - 45113524
Alignment:
| Q |
103 |
ttgtgcttttaaatcaatggttttattcaggatttctaat |
142 |
Q |
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| T |
45113485 |
ttgtgcttttgaatcaatgattttattcaggatttctaat |
45113524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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