View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19290_low_8 (Length: 250)
Name: NF19290_low_8
Description: NF19290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19290_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12761869 - 12761627
Alignment:
| Q |
1 |
ccttcagtttggccactttggcaccaataggagagggtccaccatctgctaactctggagccactgtatccaatccatgaccatatgatccaaataaaaa |
100 |
Q |
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| T |
12761869 |
ccttcagtttggccactttggcaccaataggagagggcccaccatctgctaactctggagccactgcatccaatccatgaccaaatgatccaaataaaaa |
12761770 |
T |
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| Q |
101 |
gaattcagcttccaagtactctaagttaagaggaaattcaagaagatcaacatctgatattgttgtttctttggttgcaacaacatttgtgataagggaa |
200 |
Q |
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| T |
12761769 |
gaattcagcctccaagtactctaaattaagaggaaattcaagaagatcaacatctgataatgttgtttctttggttgcaacaacatttgtgataagggaa |
12761670 |
T |
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| Q |
201 |
gcaagcaaaacaacaatggaaatagtgactctggaagtataat |
243 |
Q |
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| T |
12761669 |
gcaagcaaaacaacaatggaaatagtgactctggaagtgtaat |
12761627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 12771087 - 12770935
Alignment:
| Q |
5 |
cagtttggccactttggcaccaataggagagggtccaccatctgctaactctggagccactgtatccaatccatgaccatatgatccaaataaaaagaat |
104 |
Q |
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| T |
12771087 |
cagtttggccattttggccccaataggaggagggccaccctctgctaactctggagcaactacatccaatccatgacctaatgatccaaataaaaagaat |
12770988 |
T |
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| Q |
105 |
tcagcttccaagtactctaagttaagaggaaattcaagaagatcaacatctga |
157 |
Q |
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| T |
12770987 |
tcagcttccaaatattctaaattaagaggaaattcaagaagatcatcatctga |
12770935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 12783059 - 12782912
Alignment:
| Q |
10 |
tggccactttggcaccaataggagagggtccaccatctgctaactctggagccactgtatccaatccatgaccatatgatccaaataaaaagaattcagc |
109 |
Q |
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| T |
12783059 |
tggccacttttgccccaataggaggagggccaccctctgctaactctggagcaactacatccaatccatgacctaatgatccaaataaaaagaattcagc |
12782960 |
T |
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| Q |
110 |
ttccaagtactctaagttaagaggaaattcaagaagatcaacatctga |
157 |
Q |
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| T |
12782959 |
ctccaagtactctaaattaagaggaaattcgagaagatcaacatctga |
12782912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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