View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19290_low_9 (Length: 245)
Name: NF19290_low_9
Description: NF19290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19290_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 12761937 - 12762152
Alignment:
| Q |
19 |
atactttttaaatcttataatttgatcgtatatattgttttactatatatcttatgagtaaattaaaattctaaagtaaatattatgtatcctaattgta |
118 |
Q |
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| T |
12761937 |
atactttttaaatcttataatttgatcgtatatattgttttattatatatcttatgagtaaattaaaatactaaagtaaatattatgtatcctaattgta |
12762036 |
T |
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| Q |
119 |
gggccataaaaagcacagtgaatgggttttctaggcctttgttaaatctaagcaaatcaacatttgccaaggtgattgacagtgcctttggaaaacctct |
218 |
Q |
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| T |
12762037 |
gggccataaaaagcacagtgaaagggttttctaggcctttgttaaatctaagcaaatcaacatttgccaaggtgattgataatgcctttggaaaacctct |
12762136 |
T |
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| Q |
219 |
acaccctccttttgat |
234 |
Q |
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| T |
12762137 |
acaccctccttttgat |
12762152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 12771235 - 12771356
Alignment:
| Q |
113 |
attgtagggccataaaaagcacagtgaatgggttttctaggcctttgttaaatctaagcaaatcaacatttgccaaggtgattgacagtgcctttggaaa |
212 |
Q |
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| T |
12771235 |
attgtagggctataaagagcacagtgaaggggttccctaggccttgtatggatctaagcatatcatcatttgccaaggtgatggatagtgcctttggaaa |
12771334 |
T |
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| Q |
213 |
acctctacaccctccttttgat |
234 |
Q |
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| T |
12771335 |
acctctacacccaccttttgat |
12771356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 12783304 - 12783425
Alignment:
| Q |
113 |
attgtagggccataaaaagcacagtgaatgggttttctaggcctttgttaaatctaagcaaatcaacatttgccaaggtgattgacagtgcctttggaaa |
212 |
Q |
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|||||||||| ||||| |||||||||| || ||| |||| ||||| ||| |||||||||||||| ||||||||||| | || || |||||||||||| | |
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| T |
12783304 |
attgtagggctataaagagcacagtgagaggatttcctagacctttattagatctaagcaaatcatcatttgccaagataatggatagtgcctttggaca |
12783403 |
T |
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| Q |
213 |
acctctacaccctccttttgat |
234 |
Q |
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||||| ||||||||||||||| |
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| T |
12783404 |
tcctcttcaccctccttttgat |
12783425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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