View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19291_high_15 (Length: 311)
Name: NF19291_high_15
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_high_15 |
 | |
|
| [»] scaffold0961 (1 HSPs) |
| | |
|
| [»] scaffold1825 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 35 - 297
Target Start/End: Original strand, 52368757 - 52369019
Alignment:
| Q |
35 |
aatttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52368757 |
aatttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaa |
52368856 |
T |
|
| Q |
135 |
cctttacaaaaaagagttacacttagcacaaagtaaaaaacattgttccataaagtaacatgaataagacaacaactaaagttataatgtaatatcaatt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52368857 |
cctttacaaaaaagagttacacttagcacaaagtaaaaaacattgttccataaagtaacatgaataagacaaaaactaaagttataatgtaatatcaatt |
52368956 |
T |
|
| Q |
235 |
taattatatttttagaaatttaaataccttagctgctcttgttcttgctctagcccaacgtga |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52368957 |
taattatatttttagaaatttaaataccttagctgctcttgttcttgctctagcccaacgtga |
52369019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 15607481 - 15607609
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||||| || || | ||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
15607481 |
ttgaatgaaataatgtaagaaa-gaaacttatagcttcaagccattgctgtaatgctaatttttgtgc-ttttcattcttagataaaccttttccaacct |
15607578 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagt |
168 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
15607579 |
ttacaaaaaagagttacatttagcacaaagt |
15607609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 16562113 - 16562184
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttt |
109 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||||||| ||||| | | ||||||||||||||||| |
|
|
| T |
16562113 |
ttgaatgaactaatgtaagaaaagaaacttatagcttcaagccattgttgtaattctaatttttgtgccttt |
16562184 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 73 - 298
Target Start/End: Complemental strand, 16250256 - 16250028
Alignment:
| Q |
73 |
ttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacctttacaaaaaagagttacacttagcacaaagtaaaa |
172 |
Q |
| |
|
||||| ||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| || | ||||||||||||||||||| |||||||||||||| | |
|
|
| T |
16250256 |
ttcaaaccattgttgtaatgctaatttttatgccttttcattcttagataaacctttttcagcatttacaaaaaagagttacatttagcacaaagtaaca |
16250157 |
T |
|
| Q |
173 |
aacattgttccataaa-------gtaacatgaataagacaacaactaaagttataatgtaatatcaatttaattatatttttagaaatttaaatacctta |
265 |
Q |
| |
|
||| |||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
16250156 |
aaccttgttccatataaaatattgtaacatgaataagacaacacctaaagttataatgttatatcaattcaatta----tttagaaatttaaatacatta |
16250061 |
T |
|
| Q |
266 |
gctgctcttgttcttgctctagcccaacgtgat |
298 |
Q |
| |
|
||| ||||||||||| |||||||||||| |||| |
|
|
| T |
16250060 |
gcttctcttgttcttcctctagcccaacttgat |
16250028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 23494090 - 23494161
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttt |
109 |
Q |
| |
|
||||||||| ||| |||||||||| |||||| |||||||||||| ||||| | | ||||||||||||||||| |
|
|
| T |
23494090 |
ttgaatgaactaacgtaagaaaagaaacttatagcttcaagccattgttgtaattctaatttttgtgccttt |
23494161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 17833949 - 17833817
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||| ||||| | ||||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
17833949 |
ttgaatgaaacaatgtaagaaaagcaacttacaacttcaagccattgttgtattgctaatttttatgcattttcattcttagataaaccttttccaacct |
17833850 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagtaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
17833849 |
ttacaaaaaagagttacatttagcacaaagtaa |
17833817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 16544210 - 16544342
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||| ||||| | | ||||||||| ||| |||| || |||||||||||||||| |||| | |
|
|
| T |
16544210 |
ttgaatgaaataatgtaagaaaagcaacttacaacttcaacccattgttgcattactaatttttatgcatttttattcttagataaacctttttcaacat |
16544309 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagtaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
16544310 |
ttacaaaaaagagttacatttagcacaaagtaa |
16544342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 35573611 - 35573479
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||||||| | ||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
35573611 |
ttgaatgaaataatgtaagaaaaacaacttacaacttcaagccattgttgaattactaatttttatgcattttcattcttagataaaccttttccaacct |
35573512 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagtaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
35573511 |
ttacaaaaaagagttacatttagcacaaagtaa |
35573479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 10375164 - 10375032
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| |||||||||| ||||| | ||||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
10375164 |
ttgaatgaaataatgcaagaaaaacaacttacaacttcaagccattgttgtattgctaatttttatgcattttcattcttagataaaccttttccaacct |
10375065 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagtaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
10375064 |
ttacaaaaaagagttacatttagcacaaagtaa |
10375032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 37635077 - 37635148
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttt |
109 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||||||| ||||| | | ||||||||||||||||| |
|
|
| T |
37635077 |
ttgaatgaactaatgtaagaaaagaaacttatagcttcaagccattgttgtaattctaatttttgtgccttt |
37635148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 22477892 - 22478024
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||||| | | ||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22477892 |
ttgaatgaaataatgtaagaaaaacaacttacaacttcaagccattgttgtattactaatttttatgcattttcattcttagataaaccttttccaacct |
22477991 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagtaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
22477992 |
ttacaaaaaagagttacatttagcacaaagtaa |
22478024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 36307979 - 36308111
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||| | | ||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
36307979 |
ttgaatgaaataatgtaagaaaagcaacttacaacttcaagccattgttgtattactaatttttatgtattttcattcttagataaaccttttccaacct |
36308078 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagtaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
36308079 |
ttacaaaaaagagttacatttagcacaaagtaa |
36308111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 5920525 - 5920393
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||| | | ||||||||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
5920525 |
ttgaatgaaataatgtaagaaaagcaacttacaacttcaagccattgttgtattactaatttttatgtattttcattgttagataaaccttttccaacct |
5920426 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagtaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
5920425 |
ttacaaaaaagagttacatttagcacaaagtaa |
5920393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 17492964 - 17492890
Alignment:
| Q |
63 |
aacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| || |||||||| || |||||||| ||||||| |
|
|
| T |
17492964 |
aacttacagcttcaagccaatgttggagggctaatttttgtgctttgtcatccttggacaaacctttcccaacct |
17492890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 243 - 111
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
243 |
ttgaatgaaataatgtaagaaaatcaacttacaacttcaagccattgttgtgctgctaatttttatgcattttcattcttagataaaccttttccaacct |
144 |
T |
|
| Q |
138 |
ttacaaaaaagagttacacttagcacaaagtaa |
170 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |
|
|
| T |
143 |
ttacaaaaaatagttacatttagcacaaagtaa |
111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1825 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1825
Description:
Target: scaffold1825; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 869 - 940
Alignment:
| Q |
38 |
ttgaatgaaataatgtaagaaaagcaacttacagcttcaagccaatgttgaagtgctaatttttgtgccttt |
109 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||||||| ||||| | | ||||||||||||||||| |
|
|
| T |
869 |
ttgaatgaactaatgtaagaaaagaaacttatagcttcaagccattgttgtaattctaatttttgtgccttt |
940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 6005395 - 6005467
Alignment:
| Q |
65 |
cttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaaccttttccaacct |
137 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||| || ||||| ||| | || |||||||| |||| |
|
|
| T |
6005395 |
cttacagcttcaagccaatgtctaagagctaatttttgtgctttatcatctttacacaatccttttcccacct |
6005467 |
T |
|
Back To:
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