View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19291_high_17 (Length: 286)

Name: NF19291_high_17
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19291_high_17
NF19291_high_17
[»] chr1 (28 HSPs)
chr1 (19-276)||(48941436-48941693)
chr1 (77-256)||(20381135-20381311)
chr1 (64-276)||(12140777-12141002)
chr1 (77-254)||(15342773-15342946)
chr1 (70-276)||(48379476-48379680)
chr1 (166-276)||(9693920-9694029)
chr1 (77-154)||(8259481-8259558)
chr1 (70-147)||(9694095-9694171)
chr1 (70-119)||(51776547-51776596)
chr1 (69-154)||(50377946-50378033)
chr1 (20-66)||(16808718-16808764)
chr1 (25-66)||(3282847-3282888)
chr1 (25-66)||(3284548-3284589)
chr1 (25-66)||(9312075-9312116)
chr1 (25-66)||(17449357-17449398)
chr1 (70-154)||(29700954-29701038)
chr1 (111-250)||(26451808-26451946)
chr1 (77-159)||(14624978-14625060)
chr1 (94-156)||(32714284-32714346)
chr1 (16-66)||(37664690-37664740)
chr1 (16-66)||(37674412-37674462)
chr1 (168-236)||(34312636-34312704)
chr1 (69-115)||(16255515-16255561)
chr1 (16-66)||(37702232-37702282)
chr1 (77-175)||(43728607-43728705)
chr1 (25-66)||(9310458-9310499)
chr1 (191-276)||(25388964-25389048)
chr1 (70-119)||(26451971-26452020)
[»] scaffold0069 (1 HSPs)
scaffold0069 (77-256)||(60924-61100)
[»] chr4 (34 HSPs)
chr4 (168-276)||(44707597-44707705)
chr4 (166-276)||(25197303-25197418)
chr4 (166-265)||(15024569-15024668)
chr4 (89-276)||(44515953-44516139)
chr4 (70-154)||(16529832-16529916)
chr4 (69-153)||(56192215-56192299)
chr4 (78-250)||(45549086-45549253)
chr4 (70-154)||(36755114-36755198)
chr4 (70-161)||(13205677-13205768)
chr4 (186-274)||(28992539-28992626)
chr4 (77-156)||(12832433-12832512)
chr4 (70-141)||(19477659-19477730)
chr4 (70-149)||(28992666-28992744)
chr4 (70-148)||(38476282-38476360)
chr4 (25-66)||(3529291-3529332)
chr4 (70-143)||(15024707-15024780)
chr4 (25-66)||(18656154-18656195)
chr4 (70-143)||(25197457-25197530)
chr4 (25-66)||(52518805-52518846)
chr4 (25-66)||(52520647-52520688)
chr4 (25-66)||(54296474-54296515)
chr4 (83-154)||(3534046-3534117)
chr4 (151-278)||(38476137-38476263)
chr4 (166-256)||(16529944-16530033)
chr4 (25-66)||(7040407-7040448)
chr4 (25-66)||(23564819-23564860)
chr4 (25-66)||(23566493-23566534)
chr4 (25-66)||(23985820-23985861)
chr4 (144-276)||(36284549-36284680)
chr4 (190-254)||(36755250-36755313)
chr4 (70-141)||(29845137-29845208)
chr4 (92-145)||(44707742-44707795)
chr4 (70-139)||(55693110-55693179)
chr4 (193-265)||(46433106-46433177)
[»] chr3 (17 HSPs)
chr3 (166-253)||(51370417-51370504)
chr3 (70-155)||(27371688-27371773)
chr3 (71-154)||(26952551-26952634)
chr3 (70-256)||(18090366-18090551)
chr3 (62-276)||(26919237-26919459)
chr3 (184-254)||(26952437-26952506)
chr3 (64-153)||(51370301-51370390)
chr3 (190-274)||(47342454-47342538)
chr3 (71-138)||(37333177-37333244)
chr3 (25-66)||(1140047-1140088)
chr3 (25-66)||(6789666-6789707)
chr3 (70-141)||(19554949-19555020)
chr3 (77-148)||(47342338-47342409)
chr3 (28-66)||(17402930-17402968)
chr3 (188-254)||(27371812-27371878)
chr3 (84-121)||(11137616-11137653)
chr3 (70-154)||(29078918-29079001)
[»] chr7 (29 HSPs)
chr7 (77-276)||(29235543-29235743)
chr7 (78-276)||(26576019-26576216)
chr7 (71-141)||(35015915-35015985)
chr7 (71-148)||(16706687-16706763)
chr7 (71-148)||(17680923-17680999)
chr7 (71-140)||(35016074-35016143)
chr7 (70-144)||(4167332-4167406)
chr7 (85-154)||(965249-965318)
chr7 (77-138)||(12287089-12287150)
chr7 (25-66)||(28124732-28124773)
chr7 (25-66)||(28126559-28126600)
chr7 (25-66)||(37405594-37405635)
chr7 (199-255)||(2485192-2485247)
chr7 (170-265)||(965350-965444)
chr7 (74-145)||(2485402-2485473)
chr7 (72-156)||(6182490-6182576)
chr7 (70-116)||(1910967-1911013)
chr7 (28-66)||(20046644-20046682)
chr7 (191-276)||(1706436-1706520)
chr7 (25-66)||(4895630-4895671)
chr7 (25-66)||(44963209-44963250)
chr7 (188-276)||(1911099-1911186)
chr7 (166-254)||(12287192-12287279)
chr7 (189-251)||(4167229-4167291)
chr7 (69-122)||(243351-243404)
chr7 (191-276)||(1778770-1778853)
chr7 (81-154)||(33037228-33037301)
chr7 (85-154)||(34519458-34519527)
chr7 (71-131)||(18273476-18273536)
[»] chr8 (22 HSPs)
chr8 (85-256)||(20765634-20765802)
chr8 (70-154)||(6148444-6148527)
chr8 (80-156)||(34474434-34474509)
chr8 (70-153)||(41407198-41407281)
chr8 (25-66)||(3375567-3375608)
chr8 (25-66)||(3379258-3379299)
chr8 (25-66)||(36535976-36536017)
chr8 (190-265)||(37127548-37127622)
chr8 (77-140)||(37127688-37127751)
chr8 (70-148)||(8845559-8845637)
chr8 (25-66)||(5567472-5567513)
chr8 (77-154)||(7186195-7186272)
chr8 (25-66)||(30224276-30224317)
chr8 (62-129)||(1598170-1598237)
chr8 (226-276)||(40978836-40978886)
chr8 (166-276)||(43429433-43429542)
chr8 (191-276)||(6148306-6148390)
chr8 (25-62)||(6428790-6428827)
chr8 (25-66)||(25249052-25249093)
chr8 (70-114)||(25141034-25141078)
chr8 (25-57)||(31032147-31032179)
chr8 (192-256)||(40216493-40216556)
[»] scaffold0355 (1 HSPs)
scaffold0355 (77-276)||(2653-2848)
[»] chr6 (20 HSPs)
chr6 (85-154)||(15489393-15489462)
chr6 (63-254)||(22746968-22747157)
chr6 (70-154)||(32183777-32183861)
chr6 (190-276)||(15134910-15134995)
chr6 (61-154)||(21208145-21208238)
chr6 (25-66)||(15868438-15868479)
chr6 (25-65)||(15866627-15866667)
chr6 (70-154)||(20969775-20969859)
chr6 (70-156)||(521165-521251)
chr6 (28-66)||(5376923-5376961)
chr6 (28-66)||(5378778-5378816)
chr6 (191-276)||(521303-521387)
chr6 (25-66)||(1088797-1088838)
chr6 (25-66)||(33866145-33866186)
chr6 (25-66)||(33869292-33869333)
chr6 (71-131)||(27436373-27436433)
chr6 (190-254)||(32183913-32183976)
chr6 (89-154)||(15135051-15135117)
chr6 (25-66)||(9415114-9415155)
chr6 (25-66)||(15149189-15149230)
[»] chr2 (14 HSPs)
chr2 (56-221)||(6190114-6190285)
chr2 (166-275)||(43652593-43652702)
chr2 (170-276)||(22705656-22705761)
chr2 (70-154)||(9032715-9032799)
chr2 (70-154)||(19494734-19494818)
chr2 (156-256)||(25322912-25323011)
chr2 (70-140)||(25322811-25322881)
chr2 (77-255)||(840198-840373)
chr2 (66-112)||(16591181-16591227)
chr2 (25-66)||(29758166-29758207)
chr2 (188-255)||(7315255-7315321)
chr2 (70-127)||(30471428-30471485)
chr2 (61-154)||(7315371-7315466)
chr2 (193-265)||(9032580-9032651)
[»] chr5 (7 HSPs)
chr5 (70-154)||(23418863-23418947)
chr5 (76-254)||(35377844-35378024)
chr5 (70-138)||(9622405-9622473)
chr5 (78-154)||(27903561-27903636)
chr5 (25-66)||(39787203-39787244)
chr5 (77-148)||(43100959-43101030)
chr5 (70-154)||(19279431-19279515)
[»] scaffold0006 (1 HSPs)
scaffold0006 (81-255)||(178275-178442)
[»] scaffold0043 (2 HSPs)
scaffold0043 (70-155)||(71699-71784)
scaffold0043 (186-254)||(71598-71666)
[»] scaffold1940 (1 HSPs)
scaffold1940 (70-154)||(551-635)
[»] scaffold0001 (1 HSPs)
scaffold0001 (70-154)||(428287-428370)
[»] scaffold0251 (1 HSPs)
scaffold0251 (25-66)||(6272-6313)
[»] scaffold0057 (1 HSPs)
scaffold0057 (25-66)||(58832-58873)
[»] scaffold0281 (1 HSPs)
scaffold0281 (70-131)||(22272-22332)
[»] scaffold0003 (1 HSPs)
scaffold0003 (71-131)||(50929-50989)
[»] scaffold0039 (1 HSPs)
scaffold0039 (191-254)||(94229-94291)
[»] scaffold0332 (1 HSPs)
scaffold0332 (70-115)||(4626-4671)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 48941693 - 48941436
Alignment:
Q  19 tatatgtatagagattagtttgagtaaccaactctaactaacttctaaggtcatccataatggtgggtgtttcacctatttaacaccatattaaataggc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |    
T  48941693 tatatgtatagagattagtttgagtaaccaactctaactaacttctaaggtcatccataatggtgggtgtttcatctatttagcaccatattaaatagac 48941594  T
Q  119 atccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataa 218  Q
    |  | |||||||||||||||||||||| |||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48941593 actcacattgtggggtataatatttggatgtctatgaaagtatcttttctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataa 48941494  T
Q  219 atttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||    
T  48941493 atttttattgaaatgtaatgatatgaaattatttatagaatctatttcgtaatttctt 48941436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 256
Target Start/End: Complemental strand, 20381311 - 20381135
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcac 176  Q
    |||||||| ||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||  |||||| ||||| ||||||    ||||||||||     
T  20381311 aatggtggatgtttcacctatttagcaccatattaaataggcactcccattgtggagtataatacatgggtggctatggaagcac--cctctctcttcat 20381214  T
Q  177 tttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtgg 256  Q
    ||||  |||   |||||||||||||| |||| ||||||||||| |||| ||||||||||||| ||| |||||||||||||    
T  20381213 ttttcatgggttccatttaaaaaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattatttgtgg 20381135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 276
Target Start/End: Complemental strand, 12141002 - 12140777
Alignment:
Q  64 taaggtcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttg----------------ggt 147  Q
    |||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||||  ||||||| ||||||||||||                |||    
T  12141002 taaggttatccacaatggtgggtgtttcacctatttaacactatatttaataggcatccttattgtggagtataatatttgtgtgcctgtcgagaagggt 12140903  T
Q  148 gtctatgaaagcacattgtctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaat 247  Q
    | ||||| || |||  |  |||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||| ||| ||||    
T  12140902 ggctatggaaccaccct--ctctcttcaccttttgtggaccctatttaataaatcataatgaattaaataaatttatattgaaatgtaatgatat-aaat 12140806  T
Q  248 tatttgtggaatctatttcgtaatttctt 276  Q
    ||||||||| |  ||||| ||||||||||    
T  12140805 tatttgtgggacttatttagtaatttctt 12140777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 254
Target Start/End: Complemental strand, 15342946 - 15342773
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcac 176  Q
    ||||||||||| |||||||||||| ||||| |||||||| ||| ||||||||||| ||||||||  |||||| ||||| ||||||  | ||||||||||     
T  15342946 aatggtgggtgcttcacctatttagcaccacattaaataagca-ccccattgtggagtataatacatgggtggctatggaagcac--tctctctcttcat 15342850  T
Q  177 tttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    ||||  ||| || ||||||| ||||  |||| ||||||||||| |||| ||||||| ||||| ||| |||||||||||    
T  15342849 ttttcatgggccacatttaataaattttaataaaataaataaa-ttttgttgaaatataatgatataaaattatttgt 15342773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 276
Target Start/End: Original strand, 48379476 - 48379680
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctc 169  Q
    |||||| ||||||||||| |||||||||||| ||||| |||||||||||| ||||||||| | ||||||||  |||||| ||||| ||||||| | || |    
T  48379476 catccacaatggtgggtgcttcacctatttagcaccacattaaataggca-ccccattgtagagtataatacatgggtggctatggaagcacactctcac 48379574  T
Q  170 tcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgta 269  Q
    | |||| ||||  |||   ||||||||||||   |||| ||||||||||| |||| ||||||||||||| ||  ||| ||||||||| | ||||||  ||    
T  48379575 ttttcatttttcatgggttccatttaaaaaaatttaataaaataaataaa-ttttgttgaaatgtaatgatacaaaaatatttgtgggacctatttaata 48379673  T
Q  270 atttctt 276  Q
    |||||||    
T  48379674 atttctt 48379680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 276
Target Start/End: Complemental strand, 9694029 - 9693920
Alignment:
Q  166 tctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctattt 265  Q
    ||||||||||||||| | ||  ||||||| | |||||||||||||||||||||| |||| ||||||||||||| |||  |||||||||||||| ||||||    
T  9694029 tctctcttcacttttcgcggctcccatttcataaatcataatgaaataaataaa-ttttgttgaaatgtaatgatatagaattatttgtggaacctattt 9693931  T
Q  266 cgtaatttctt 276  Q
     ||||||||||    
T  9693930 tgtaatttctt 9693920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 8259558 - 8259481
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||||||||| |||| ||||||| || ||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  8259558 aatggtgggtgcttcatctatttagcatcatattaaataggcacccccattgtggggtataatatatgggtggctatg 8259481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 9694171 - 9694095
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggt 147  Q
    |||||| ||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||| |||||| ||||||||    
T  9694171 catccaaaatggtgggtgcttcacctatttagcaccatactaaataggca-ccccattgtggagtataacatttgggt 9694095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 51776547 - 51776596
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggca 119  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  51776547 catccataatggtgggtgtttcacctatttagcaccacattaaataggca 51776596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 50378033 - 50377946
Alignment:
Q  69 tcatccataatggtgggtgtttcacctatttaacacc--atattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||||||||||||| || ||||||||||||||||||  ||||||||||| || | ||||||| | ||||||||| |||||| |||||    
T  50378033 tcatccataatggtgtgtatttcacctatttaacaccatatattaaatagacacctccattgtagagtataatatatgggtgcctatg 50377946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 16808718 - 16808764
Alignment:
Q  20 atatgtatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||    
T  16808718 atatatatagagattagtttgagtaactaactctaactaacttctaa 16808764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 3282888 - 3282847
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3282888 tatagagattagtttgagtaactaactctaactaacttctaa 3282847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 3284589 - 3284548
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3284589 tatagagattagtttgagtaactaactctaactaacttctaa 3284548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 9312116 - 9312075
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  9312116 tatagagattagtttgagtaactaactctaactaacttctaa 9312075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 17449398 - 17449357
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  17449398 tatagagattagtttgagtaactaactctaactaacttctaa 17449357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 29700954 - 29701038
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||| || ||||||||| ||| |||||||||||||| ||||| ||||| | | ||||| ||||||| ||||    
T  29700954 catccagaatggtgggtgcttaacctatttagcacaatattaaataggcacccccactgtggagcaaaatatatgggtgtatatg 29701038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 26451946 - 26451808
Alignment:
Q  111 aaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcactttttgtggaccccatttaaaaaatcataatgaa 210  Q
    ||||||||| | |||||||||  |||||||| ||| ||| |||| ||||||  | |||||||||| ||||  ||| |  ||||||| ||||| |||| ||    
T  26451946 aaataggcacctccattgtggaatataatatatggatgtttatggaagcaccctctctctcttcatttttcatgggcttcatttaataaatcttaataaa 26451847  T
Q  211 ataaataaatttttattgaaatgtaatggtatgaaattat 250  Q
    || |||||||||| || ||||||||||| ||| |||||||    
T  26451846 attaataaattttgat-gaaatgtaatgatataaaattat 26451808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 14624978 - 14625060
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagc 159  Q
    ||||||||||| |||||||||||| ||||| |||||| |||||  || ||||||| | ||||||| |||||| ||||| ||||    
T  14624978 aatggtgggtgcttcacctatttagcaccacattaaagaggcactcctattgtggagaataatatatgggtggctatggaagc 14625060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 32714346 - 32714284
Alignment:
Q  94 ctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaa 156  Q
    ||||||| ||||||||||||||||||||||  |||| | ||||||||| |||||| |||||||    
T  32714346 ctatttatcaccatattaaataggcatccctgttgtagagtataatatatgggtggctatgaa 32714284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 37664690 - 37664740
Alignment:
Q  16 tcatatatgtatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||||||||||    
T  37664690 tcatttatatatagagattagtttgaataactaactctaactaacttctaa 37664740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 37674412 - 37674462
Alignment:
Q  16 tcatatatgtatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||||||||||    
T  37674412 tcatttatatatagagattagtttgaataactaactctaactaacttctaa 37674462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 34312636 - 34312704
Alignment:
Q  168 tctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaa 236  Q
    |||||| |||||||||| ||  |||| || |||||||||||||||||| ||| |||| |||||||||||    
T  34312636 tctctttactttttgtgaacttcattcaataaatcataatgaaataaagaaaattttgttgaaatgtaa 34312704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 16255561 - 16255515
Alignment:
Q  69 tcatccataatggtgggtgtttcacctatttaacaccatattaaata 115  Q
    ||||||||||  |||||||||||||||||||| ||||| ||||||||    
T  16255561 tcatccataaaagtgggtgtttcacctatttagcaccacattaaata 16255515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 37702282 - 37702232
Alignment:
Q  16 tcatatatgtatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||| ||||||    
T  37702282 tcatttatatatagagattagtttgaataactaactctaactaatttctaa 37702232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 43728705 - 43728607
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttca 175  Q
    |||||||| || |||| ||||||| ||||| |||||||||||| | ||||||||| || ||| || |||| | ||||| ||||||  | ||||||||||    
T  43728705 aatggtggatgcttcatctatttagcaccacattaaataggcacctccattgtggagtgtaacatatgggcgcctatggaagcaccatctctctcttca 43728607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 9310499 - 9310458
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  9310499 tatagatattaatttgagtaactaactctaactaacttctaa 9310458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 25389048 - 25388964
Alignment:
Q  191 atttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||||| ||||  |||| |||||||||||||||  ||||||||||||| ||| ||||||||| | | | |||||| ||||||||||    
T  25389048 atttaataaattttaataaaataaataaattttg-ttgaaatgtaatgatataaaattatttataggacctatttagtaatttctt 25388964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 26452020 - 26451971
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggca 119  Q
    |||||| |||||||||||||| | ||||||| ||| ||||||||||||||    
T  26452020 catccacaatggtgggtgttttatctatttagcactatattaaataggca 26451971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 256
Target Start/End: Complemental strand, 61100 - 60924
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcac 176  Q
    |||||||| ||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||  |||||| ||||| ||||||    ||||||||||     
T  61100 aatggtggatgtttcacctatttagcaccatattaaataggcactcccattgtggagtataatacatgggtggctatggaagcac--cctctctcttcat 61003  T
Q  177 tttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtgg 256  Q
    ||||  |||   |||||||||||||| |||| ||||||||||| |||| ||||||||||||| ||| |||||||||||||    
T  61002 ttttcatgggttccatttaaaaaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattatttgtgg 60924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 44707705 - 44707597
Alignment:
Q  168 tctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcg 267  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||  |||||||||||| |||||||| |    
T  44707705 tctctccactttttgtagaccccatttaataaatcataatgaaataaataaatttttgttgaaatgtaatgatatataattatttgtgggatctattttg 44707606  T
Q  268 taatttctt 276  Q
    |||||||||    
T  44707605 taatttctt 44707597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 276
Target Start/End: Complemental strand, 25197418 - 25197303
Alignment:
Q  166 tctctcttcactttttgtgg-----accccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatc 260  Q
    ||||||||||||||||||||     || |||||||| ||||||||||||||||||||||||||  ||||||||||||| |||| |||||||||||| | |    
T  25197418 tctctcttcactttttgtggacaccacaccatttaataaatcataatgaaataaataaattttagttgaaatgtaatgatatggaattatttgtgggacc 25197319  T
Q  261 tatttcgtaatttctt 276  Q
    ||||| ||||||||||    
T  25197318 tatttagtaatttctt 25197303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 15024668 - 15024569
Alignment:
Q  166 tctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctattt 265  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||| ||||| |||  |||||||||||| | ||||||    
T  15024668 tctctctacactttttgtgaaccccatttaataaatcataatgaaataaatatatttttgttgaaatataatgatattgaattatttgtgggacctattt 15024569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 276
Target Start/End: Complemental strand, 44516139 - 44515953
Alignment:
Q  89 ttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcactttttgtggacc 188  Q
    |||||||||||| ||||| ||||||||  || |||  ||||||  |||||||  |||||| ||||||||||||  | |||||||||| ||||  |||  |    
T  44516139 ttcacctatttagcaccacattaaataaacacccctgttgtggaatataatacatgggtggctatgaaagcaccctttctctcttcatttttcatgggtc 44516040  T
Q  189 ccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||||||| ||||  |||| ||||||||||| |||| ||||||||||||| ||| |||||||| |||| ||||||||  |||||||||    
T  44516039 ccatttaataaatattaataaaataaataaa-ttttgttgaaatgtaatgatataaaattattagtgggatctatttaataatttctt 44515953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 16529832 - 16529916
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||| |||||||||||| ||||| |||||||||||| ||||||||||| ||||||||  |||||| |||||    
T  16529832 catccacaatggtgggtgcttcacctatttagcaccacattaaataggcacccccattgtggagtataatacatgggtggctatg 16529916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 56192215 - 56192299
Alignment:
Q  69 tcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctat 153  Q
    ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||| |||||| ||| ||||| |||||||||||    
T  56192215 tcatccacaatggtgggtgctttacctatttaacaccacattaaataggcacccccgttgtggagtaaaatatatgggtgtctat 56192299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 45549253 - 45549086
Alignment:
Q  78 atggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcact 177  Q
    ||||||||||||||||||||||| ||||| ||||||||| || | ||||||| | | ||||||| |||||||||||| ||||||     ||||||||| |    
T  45549253 atggtgggtgtttcacctatttagcaccacattaaatagacacctccattgtagagaataatatatgggtgtctatggaagcac----cctctcttcatt 45549158  T
Q  178 ttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattat 250  Q
    |||  |||  |||| |||| ||||| |||| ||||||||||| | || || |||||||||| ||| |||||||    
T  45549157 tttcatgggtcccaattaataaatcttaataaaataaataaa-tgttgttaaaatgtaatgatataaaattat 45549086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 36755114 - 36755198
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||| |||| ||||||| ||||||||||||||| || | ||||||||| ||||||||| |||||| |||||    
T  36755114 catccacaatggtgggtgcttcatctatttagcaccatattaaatagacacctccattgtggagtataatatatgggtggctatg 36755198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 13205768 - 13205677
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcac 161  Q
    |||||| ||||||||||| || |||||||||  |||| ||||||||| |||| ||||||||  ||| ||||| |||||||||||||||||||    
T  13205768 catccacaatggtgggtgcttaacctatttagtaccacattaaatagacatctccattgtgaagtaaaatatatgggtgtctatgaaagcac 13205677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 28992626 - 28992539
Alignment:
Q  186 accccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttc 274  Q
    ||||||||||| |||||||||||||||||||||| |||  ||| ||| ||||| |||  |||||||||||||| |||||| ||||||||    
T  28992626 accccatttaataaatcataatgaaataaataaaatttggttg-aatataatgatatagaattatttgtggaacctatttagtaatttc 28992539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 12832512 - 12832433
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaa 156  Q
    ||||||||||| |||||||||||| ||||| ||||||| |||| ||| ||||||| ||||||||  |||||| |||||||    
T  12832512 aatggtgggtgcttcacctatttagcaccacattaaatcggcacccctattgtggagtataatacatgggtggctatgaa 12832433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 19477730 - 19477659
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatat 141  Q
    ||||||||||  ||||||||||||||||||| ||||| |||||||||| ||| | ||||||| |||||||||    
T  19477730 catccataataatgggtgtttcacctatttatcaccacattaaataggtatctctattgtggagtataatat 19477659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 28992744 - 28992666
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgt 149  Q
    |||||| ||| ||||||| |||||||||||| ||||||| ||||||| || ||||||||||| |||||||||||| ||||    
T  28992744 catccacaattgtgggtgcttcacctatttagcaccatactaaatagaca-ccccattgtggagtataatatttgagtgt 28992666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 38476360 - 38476282
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtg 148  Q
    |||| ||||||||||||| |||||||||||| ||||| ||||||||| || ||||||| ||  ||||||||| ||||||    
T  38476360 catctataatggtgggtgcttcacctatttagcaccacattaaatagacacccccattatgaagtataatatatgggtg 38476282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3529291 - 3529332
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3529291 tatagagattagtttgagtaactaactctaactaacttctaa 3529332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 15024780 - 15024707
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatattt 143  Q
    |||||||||| |||| || |||||||||||| || ||||||||||||||| | ||||| ||| |||||||||||    
T  15024780 catccataatagtggatgcttcacctatttagcatcatattaaataggcacctccattatggagtataatattt 15024707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 18656195 - 18656154
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  18656195 tatagagattagtttgagtaactaactctaactaacttctaa 18656154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 25197530 - 25197457
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatattt 143  Q
    |||||| ||||||||||| ||||||||||||  ||| || ||||| |||| ||||||||||| |||||||||||    
T  25197530 catccacaatggtgggtgcttcacctatttagaaccgtaataaattggcacccccattgtggagtataatattt 25197457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 52518846 - 52518805
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  52518846 tatagagattagtttgagtaactaactctaactaacttctaa 52518805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 52520688 - 52520647
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  52520688 tatagagattagtttgagtaactaactctaactaacttctaa 52520647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 54296515 - 54296474
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  54296515 tatagagattagtttgagtaactaactctaactaacttctaa 54296474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 3534117 - 3534046
Alignment:
Q  83 gggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||| |||||||||||| || || |||||||||||| ||||||||||| | ||||||| |||||| |||||    
T  3534117 gggtgcttcacctatttagcatcacattaaataggcacccccattgtggagaataatatatgggtggctatg 3534046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 278
Target Start/End: Complemental strand, 38476263 - 38476137
Alignment:
Q  151 tatgaaagcacattgtctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattat 250  Q
    |||| |||||| || |||||||||| ||||  ||| || ||||||| ||||| |||| ||||||||||| |||| ||||||||||||| ||| |||  ||    
T  38476263 tatggaagcacgttctctctcttcatttttcatgggccacatttaataaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaaaaat 38476165  T
Q  251 ttgtggaatctatttcgtaatttcttct 278  Q
    || ||| | ||||||  |||||||||||    
T  38476164 ttatgggacctatttaataatttcttct 38476137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 16529944 - 16530033
Alignment:
Q  166 tctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtgg 256  Q
    |||||||||| ||||  |||  ||| ||||| ||||| |||| |||||||||||||||  ||||||||||||| ||| |||||||||||||    
T  16529944 tctctcttcatttttcatgggtcccttttaataaatcttaataaaataaataaattttg-ttgaaatgtaatgatataaaattatttgtgg 16530033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 7040448 - 7040407
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  7040448 tatagagattagtttgagtaactacctctaactaacttctaa 7040407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 23564819 - 23564860
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  23564819 tatagagattagtttgagtaactacctctaactaacttctaa 23564860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 23566493 - 23566534
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  23566493 tatagagattagtttgagtaactacctctaactaacttctaa 23566534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 23985861 - 23985820
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  23985861 tatagagattagtttgaataactaactctaactaacttctaa 23985820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 36284680 - 36284549
Alignment:
Q  144 gggtgtctatgaaagcacattgtctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatg 243  Q
    ||||| ||||| ||||||  | |||||||||| ||||||| |  |  |||||| ||||| |||| || ||||||||||||  ||||||||||||| |||     
T  36284680 gggtgcctatggaagcaccctctctctcttcattttttgttggtcatatttaataaatcttaataaattaaataaattttg-ttgaaatgtaatgatata 36284582  T
Q  244 aaattatttgtggaatctatttcgtaatttctt 276  Q
     |||||||||||| | ||||||  |||||||||    
T  36284581 gaattatttgtgggacctatttaataatttctt 36284549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 36755250 - 36755313
Alignment:
Q  190 catttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    ||||||| ||||| |||| ||||||||||| |||| ||||||||||||| ||| |||||||||||    
T  36755250 catttaataaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattatttgt 36755313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 29845208 - 29845137
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatat 141  Q
    |||||| ||||||||||  | |||||||||||||||| |||||||||| | |||| |||||| | |||||||    
T  29845208 catccacaatggtgggtcctccacctatttaacaccacattaaataggtacccccgttgtggagaataatat 29845137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 44707795 - 44707742
Alignment:
Q  92 acctatttaacaccatattaaataggcatccccattgtggggtataatatttgg 145  Q
    ||||||||| ||| ||||||||||| ||||  |||||||| |||||||||||||    
T  44707795 acctatttagcactatattaaatagacatcatcattgtggagtataatatttgg 44707742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 55693179 - 55693110
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataat 139  Q
    |||||| |||| ||| || |||| ||||||| ||||| ||||||||||||||  |||||||| |||||||    
T  55693179 catccacaatgatggatgcttcatctatttagcaccacattaaataggcatcttcattgtggagtataat 55693110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 46433177 - 46433106
Alignment:
Q  193 ttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctattt 265  Q
    |||| ||||| ||||||| ||||||||||||  ||||||||||||| |||  |||||||||||| | ||||||    
T  46433177 ttaataaatcttaatgaattaaataaattttg-ttgaaatgtaatgatatagaattatttgtgggacctattt 46433106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 51370417 - 51370504
Alignment:
Q  166 tctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttg 253  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  51370417 tctctcttcactttttgtggatcctatttaataaatcataatgaaataaataaatttttgttgaaatataatgatatgaaattatttg 51370504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 27371688 - 27371773
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatga 155  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||| |||| |||||| ||||||||||||| || ||||||    
T  27371688 catccacaatggtgggtgtttcacctatttaacactatactaaataggcaccccctttgtggagtataatatttggatgcctatga 27371773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 26952634 - 26952551
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||| || | ||||||||| |||||||||||||||| |||||    
T  26952634 atccacaatggtgggtgcttcacctatttagcaccatattaaatagacacctccattgtggagtataatatttgggtgcctatg 26952551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 18090366 - 18090551
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctc 169  Q
    |||||| |||||||| || |||| ||||||| ||||| |||||||||||| | |||||||   ||||||||| |||||| ||||| ||||||  | ||||    
T  18090366 catccacaatggtggatgcttcatctatttagcaccacattaaataggcacctccattgttatgtataatatatgggtgcctatggaagcaccctctctc 18090465  T
Q  170 tcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtgg 256  Q
    || ||| ||||| |||  | ||||||| ||||| |||| ||||||||||| | || || ||||| |||| ||| |||||||||||||    
T  18090466 tcatcattttttatgggtctcatttaataaatcttaataaaataaataaa-tgttgttaaaatggaatgatataaaattatttgtgg 18090551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 276
Target Start/End: Complemental strand, 26919459 - 26919237
Alignment:
Q  62 tctaaggtcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttg-----------ggtgtc 150  Q
    |||||| ||||||| |||||||| || ||||| |||||| |||||||||||||| ||| ||||||||| | ||||||||| ||           |||| |    
T  26919459 tctaagatcatccacaatggtggatgcttcacatatttagcaccatattaaataagcacccccattgtagagtataatatatgggttggagaatggtggc 26919360  T
Q  151 tatgaaagcacattgtctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattat 250  Q
    |||| |||||| |  |||||||||| |||||| ||  ||||||||| ||||  ||||  |||||||||| |||| ||||||||||||| ||| |||||||    
T  26919359 tatggaagcacct--tctctcttcattttttgcgggtcccatttaataaattttaattcaataaataaa-ttttgttgaaatgtaatgatataaaattat 26919263  T
Q  251 ttgtggaatctatttcgtaatttctt 276  Q
    || ||| | ||||||  |||||||||    
T  26919262 ttatgggacctatttaataatttctt 26919237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 26952506 - 26952437
Alignment:
Q  184 ggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    |||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||    
T  26952506 ggaccctatttaataaatcataatgaaataaat-aatttttgttgaaatgtaatgatataaaattatttgt 26952437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 51370301 - 51370390
Alignment:
Q  64 taaggtcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctat 153  Q
    |||||||||||| ||||||||||| |||  |||||||| ||||||||||||| |||| || ||||||   ||||||||||| ||||||||    
T  51370301 taaggtcatccacaatggtgggtgcttcgtctatttaataccatattaaatatgcattcctattgtgcaatataatatttgagtgtctat 51370390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 47342454 - 47342538
Alignment:
Q  190 catttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttc 274  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||| |||  ||||| || ||| | |||||| ||||||||    
T  47342454 catttaataaatcataatgaaataaataaattttggttgaaatgtaatgatatataattacttctgggacctatttagtaatttc 47342538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 37333177 - 37333244
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataa 138  Q
    ||||| ||||||||||| |||||||||||| ||||| ||||||||| ||||| |||||||| ||||||    
T  37333177 atccacaatggtgggtgcttcacctatttagcaccacattaaatagacatcctcattgtggagtataa 37333244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 1140088 - 1140047
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  1140088 tatagagattagtttgagtaactaactctaactaacttctaa 1140047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 6789707 - 6789666
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  6789707 tatagagattagtttgagtaactaactctaactaacttctaa 6789666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 19555020 - 19554949
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatat 141  Q
    |||||| |||||||| || ||| |||||||| ||| ||||||||||||||| || ||||||| |||||||||    
T  19555020 catccacaatggtggatgcttctcctatttaccactatattaaataggcattcctattgtggagtataatat 19554949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 47342338 - 47342409
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtg 148  Q
    ||||||||||  ||||||||||||||| |||| |||| ||||| | | ||||||| ||||||||||||||||    
T  47342338 aatggtgggtacttcacctatttaacagcatactaaacaggcacctctattgtggagtataatatttgggtg 47342409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 17402930 - 17402968
Alignment:
Q  28 agagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  17402930 agagattagtttgagtaactaactctaactaacttctaa 17402968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 27371812 - 27371878
Alignment:
Q  188 cccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    ||||||||| |||||||||||||||||||||| |||  ||||| |  |||| ||| |||||||||||    
T  27371812 cccatttaataaatcataatgaaataaataaaatttagttgaattaaaatgatataaaattatttgt 27371878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 11137616 - 11137653
Alignment:
Q  84 ggtgtttcacctatttaacaccatattaaataggcatc 121  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  11137616 ggtgtttcacctatttaacaccacattaaataagcatc 11137653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 29079001 - 29078918
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| |||| || ||| || ||||||||||||||| |||||||||| | ||||||||||| |||  |||  ||||||||||||    
T  29079001 catccacaatgatgagtgcttaacctatttaacaccacattaaataggta-ccccattgtggagtaatatacatgggtgtctatg 29078918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 276
Target Start/End: Complemental strand, 29235743 - 29235543
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctct--tc 174  Q
    ||||||||| |||||| |||||||||||||||||||||| || |   |||||| | ||||||||| |||||| ||||| ||||||  | |||||||  ||    
T  29235743 aatggtgggcgtttcatctatttaacaccatattaaataagctttttcattgtagagtataatatatgggtggctatggaagcaccctctctctctcttc 29235644  T
Q  175 actttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttc 274  Q
    |  |||  |||| ||||||||| ||||| |||| ||||||||||||||| |||||||||||||| ||| ||||||||| | | ||||||||  |||||||    
T  29235643 atatttcatggatcccatttaataaatcttaataaaataaataaatttt-attgaaatgtaatgatataaaattatttataggatctatttaataatttc 29235545  T
Q  275 tt 276  Q
    ||    
T  29235544 tt 29235543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 276
Target Start/End: Complemental strand, 26576216 - 26576019
Alignment:
Q  78 atggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcact 177  Q
    ||||| ||||||||||||||||| || |||||||| ||| || | | ||||||| ||||||||  ||||||  |||| ||||||    ||| |||||| |    
T  26576216 atggttggtgtttcacctatttagcatcatattaattagacacctctattgtggagtataatacatgggtggttatggaagcacccactctttcttcatt 26576117  T
Q  178 ttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||  |||| | ||||||| || || |||| ||||||||||| |||| ||||||||||||| ||| ||||||||| ||  ||||||||  |||||||||    
T  26576116 tttcatggatctcatttaataattcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattatttatgagatctatttaataatttctt 26576019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 35015985 - 35015915
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatat 141  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||| || |||||||| |||||||||    
T  35015985 atccacaatggtgggtgtttcatctatttagcaccatattaaataggcaccctcattgtggagtataatat 35015915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 16706763 - 16706687
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtg 148  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||||| ||||||||||| |||||| || ||||||    
T  16706763 atccacaatggtgggtgcttcacctatttagcaccacattaaataggca-ccccattgtggagtataacatatgggtg 16706687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 17680999 - 17680923
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtg 148  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||||| ||||||||||| |||||| || ||||||    
T  17680999 atccacaatggtgggtgcttcacctatttagcaccacattaaataggca-ccccattgtggagtataacatatgggtg 17680923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 35016143 - 35016074
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataata 140  Q
    ||||| ||||||||||| |||| ||||||| |||||||||||||||||| || |||||||| ||||||||    
T  35016143 atccacaatggtgggtgcttcatctatttagcaccatattaaataggcaccctcattgtggagtataata 35016074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 4167406 - 4167332
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttg 144  Q
    |||||| ||| ||| |||||||||||||||| ||||||||||||||| || || |||| ||| ||||||||||||    
T  4167406 catccacaatagtgtgtgtttcacctatttagcaccatattaaatagacaccctcattatggagtataatatttg 4167332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 965249 - 965318
Alignment:
Q  85 gtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| || |||||| ||||| |||||||||||| ||||||||||| ||| ||||| ||||||||||||    
T  965249 gtgtttaacatatttagcaccacattaaataggcacccccattgtggagtaaaatatatgggtgtctatg 965318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 12287089 - 12287150
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataa 138  Q
    ||||||||||| || ||||||||||||||| |||||||||||| | ||||||||| ||||||    
T  12287089 aatggtgggtgctttacctatttaacaccacattaaataggcacctccattgtggagtataa 12287150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 28124732 - 28124773
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  28124732 tatagagattagtttgagtaactaactctaactaacttctaa 28124773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 28126559 - 28126600
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  28126559 tatagagattagtttgagtaactaactctaactaacttctaa 28126600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 37405594 - 37405635
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  37405594 tatagagattagtttgagtaactaactctaactaacttctaa 37405635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 2485247 - 2485192
Alignment:
Q  199 aatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtg 255  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  2485247 aatcataatgaaataaataaa-ttttattgaaatttaatgatataaaattatttgtg 2485192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 965350 - 965444
Alignment:
Q  170 tcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctattt 265  Q
    |||||| |||| ||||  || |||||| ||||| |||| || ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||||||    
T  965350 tcttcatttttcgtgggtcctatttaataaatcttaataaattaaataaattttg-ttgaaatgtaatgatataaaattatttgtggaacctattt 965444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 2485473 - 2485402
Alignment:
Q  74 cataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgg 145  Q
    |||||||||||||  |||| ||||||| |||||||||||||| ||||||  ||||| | |||||||||||||    
T  2485473 cataatggtgggtccttcatctatttagcaccatattaaatatgcatccatattgtagagtataatatttgg 2485402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 6182490 - 6182576
Alignment:
Q  72 tccataatggtgggtgtttcacctatttaacaccatat--taaataggcatccccattgtggggtataatatttgggtgtctatgaa 156  Q
    |||| ||| |||| ||||||||||||||| ||||||||  |||||||||| ||| ||||||| | ||||||| |||||| |||||||    
T  6182490 tccacaatagtggatgtttcacctatttagcaccatatattaaataggcacccctattgtggagaataatatatgggtgcctatgaa 6182576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 1910967 - 1911013
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaatag 116  Q
    |||||||||||||||||| |||||||||||| ||| |||||||||||    
T  1910967 catccataatggtgggtgcttcacctatttagcactatattaaatag 1911013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 20046644 - 20046682
Alignment:
Q  28 agagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  20046644 agagattagtttgagtaactaactctaactaacttctaa 20046682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 1706520 - 1706436
Alignment:
Q  191 atttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||||| ||||  |||| |||||||||||||||  ||||||||||||| ||| ||||||||||||| | ||||||  |||||||||    
T  1706520 atttaataaatattaataaaataaataaattttg-ttgaaatgtaatgatataaaattatttgtgggacctatttaataatttctt 1706436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 4895671 - 4895630
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  4895671 tatagagattagtttgagtaaataactctaactaacttctaa 4895630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 44963250 - 44963209
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  44963250 tatagagattaatttgagtaactaactctaactaacttctaa 44963209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 1911099 - 1911186
Alignment:
Q  188 cccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||| |||| ||||| |||| |||||||||||||||  ||||||| ||||  ||| ||||||||||||| ||||||||  |||||||||    
T  1911099 cccagttaataaatcttaataaaataaataaattttg-ttgaaatataataatataaaattatttgtgggatctatttaataatttctt 1911186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 12287192 - 12287279
Alignment:
Q  166 tctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    |||||||||| ||||  |||| | ||||||| ||||| |||| |||| ||||||||||  ||||||||||||| ||| |||||||||||    
T  12287192 tctctcttcatttttcatggatctcatttaataaatcttaataaaatgaataaattttg-ttgaaatgtaatgatataaaattatttgt 12287279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 4167291 - 4167229
Alignment:
Q  189 ccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatt 251  Q
    |||||||| ||||||| ||||||||||||| ||||| | ||||||||||| |||  |||||||    
T  4167291 ccatttaataaatcatgatgaaataaataattttttgtcgaaatgtaatgatatataattatt 4167229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 243404 - 243351
Alignment:
Q  69 tcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatcc 122  Q
    |||||||||||||| |||||||||||||| |||||| | | ||||||| |||||    
T  243404 tcatccataatggtaggtgtttcacctatctaacactacactaaatagacatcc 243351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 1778770 - 1778853
Alignment:
Q  191 atttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||||| ||||| |||| |||||||||||||||  ||||||||||||| ||| ||||||||||| | ||| ||||  |||||||||    
T  1778770 atttaataaatcttaat-aaataaataaattttg-ttgaaatgtaatgatataaaattatttgtaggatcaatttaataatttctt 1778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 33037228 - 33037301
Alignment:
Q  81 gtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||||| ||| |||||||||||||||||||||||  ||||  |||||||| | ||||||| | |||| |||||    
T  33037228 gtgggtgcttcgcctatttaacaccatattaaataaacatcatcattgtggagaataatatataggtggctatg 33037301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 34519527 - 34519458
Alignment:
Q  85 gtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| || |||||| ||||| ||||||||||||  |||||| ||| ||| |||||||||||| |||||    
T  34519527 gtgtttaacgtatttagcaccacattaaataggcactcccattatggagtaaaatatttgggtgcctatg 34519458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 18273536 - 18273476
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtgg 131  Q
    ||||| |||||||| || |||||||||||| ||||||| ||||||  || |||||||||||    
T  18273536 atccacaatggtggatgcttcacctatttagcaccataataaataaacacccccattgtgg 18273476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 20765634 - 20765802
Alignment:
Q  85 gtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcactttttgtg 184  Q
    |||||| ||||||||| ||  ||||||||||||||  |||||||||| ||||||||  |||||| ||||| |||||| |  |||||||||| ||||| ||    
T  20765634 gtgtttaacctatttagcattatattaaataggcactcccattgtggagtataatacatgggtggctatggaagcacct--tctctcttcattttttatg 20765731  T
Q  185 gaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtgg 256  Q
    |  || |||||| ||||| |||| ||||||||||| |||| ||||||||||||| ||| |||||||||||||    
T  20765732 ggtccaatttaataaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattatttgtgg 20765802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 6148527 - 6148444
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||  ||||||||| ||||||||||||    
T  6148527 catccacaatggtgggtgcttcacctatttaacaccatatt-aataagcatctccattgtgaagtataatatatgggtgtctatg 6148444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 34474509 - 34474434
Alignment:
Q  80 ggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaa 156  Q
    |||||||||||||||||||||||||||  ||||||| |||| |||||||||| ||||||||| ||| ||||||||||    
T  34474509 ggtgggtgtttcacctatttaacaccacgttaaatatgcat-cccattgtggagtataatatatggatgtctatgaa 34474434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 41407198 - 41407281
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctat 153  Q
    |||||| |||| |||||| |||| |||||||||||||||||||||||||| |  |||||||| ||| ||||| |||||| ||||    
T  41407198 catccacaatgatgggtgcttcatctatttaacaccatattaaataggcaccatcattgtggagtaaaatatatgggtggctat 41407281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3375567 - 3375608
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3375567 tatagagattagtttgagtaactaactctaactaacttctaa 3375608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3379258 - 3379299
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3379258 tatagagattagtttgagtaactaactctaactaacttctaa 3379299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 36535976 - 36536017
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  36535976 tatagagattagtttgagtaactaactctaactaacttctaa 36536017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 37127622 - 37127548
Alignment:
Q  190 catttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctattt 265  Q
    ||||||| | ||| |||| |||||||||||||||  ||||||||||||| ||| ||||||||||||| ||||||||    
T  37127622 catttaatagatcttaataaaataaataaattttg-ttgaaatgtaatgatataaaattatttgtgggatctattt 37127548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 37127751 - 37127688
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataata 140  Q
    ||||||||||| || ||||||||| ||||| ||||||||||||||| || ||||| ||||||||    
T  37127751 aatggtgggtgctttacctatttatcaccacattaaataggcatcctcactgtggagtataata 37127688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 8845559 - 8845637
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtg 148  Q
    |||||| ||||||||||| || ||||||||| ||||| ||||||||||||   ||||||||| |||||| || ||||||    
T  8845559 catccacaatggtgggtgctttacctatttagcaccacattaaataggcacttccattgtggagtataacatatgggtg 8845637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 5567513 - 5567472
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  5567513 tatagagattagtttgagtaactaactccaactaacttctaa 5567472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 7186195 - 7186272
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||||||||| ||||| |||||| |||| |||||||||||||  | |||||||| | ||||||| |||||| |||||    
T  7186195 aatggtgggtgcttcacatatttagcaccgtattaaataggcactctcattgtggagaataatatatgggtggctatg 7186272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 30224317 - 30224276
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  30224317 tatagagattagtttgagtaactacctctaactaacttctaa 30224276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 1598237 - 1598170
Alignment:
Q  62 tctaaggtcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgt 129  Q
    |||||| ||||||| |||| || ||| || ||||||||| |||||||||||||||||  |||||||||    
T  1598237 tctaagatcatccacaatgctgagtgcttaacctatttagcaccatattaaataggcgcccccattgt 1598170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 40978836 - 40978886
Alignment:
Q  226 ttgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    ||||||||||||| ||| ||||||||||||||| ||||||  |||||||||    
T  40978836 ttgaaatgtaatgatataaaattatttgtggaacctatttaataatttctt 40978886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 276
Target Start/End: Original strand, 43429433 - 43429542
Alignment:
Q  166 tctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctattt 265  Q
    |||||||||| ||||||| |  || |||||| ||||| |||  || ||||||||||||  ||||||||||||| |||  ||||||||||||||  |||||    
T  43429433 tctctcttcattttttgttggtcctatttaataaatcctaaaaaattaaataaattttg-ttgaaatgtaatgatatagaattatttgtggaacttattt 43429531  T
Q  266 cgtaatttctt 276  Q
      |||||||||    
T  43429532 aataatttctt 43429542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 6148390 - 6148306
Alignment:
Q  191 atttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||||| ||||| |||| ||||||||||| |||| ||||||| ||||| |||  |||||||||||| | ||||||  |||||||||    
T  6148390 atttaataaatcttaataaaataaataaa-ttttgttgaaatttaatgatatagaattatttgtgggacctatttaataatttctt 6148306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 6428827 - 6428790
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaactt 62  Q
    |||||||||||||||||||||| | |||||||||||||    
T  6428827 tatagagattagtttgagtaactacctctaactaactt 6428790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 25249093 - 25249052
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| | || ||||||||||||||    
T  25249093 tatagagattagtttgagtaactacctttaactaacttctaa 25249052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 25141078 - 25141034
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaat 114  Q
    |||||| |||||||| || |||| |||||||||||||||||||||    
T  25141078 catccacaatggtggatgcttcatctatttaacaccatattaaat 25141034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 31032147 - 31032179
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaact 57  Q
    |||||||||||||||||||||| ||||||||||    
T  31032147 tatagagattagtttgagtaactaactctaact 31032179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 40216493 - 40216556
Alignment:
Q  192 tttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtgg 256  Q
    ||||| ||||| |||| ||||||||||| |||| ||||||||||||| ||| |||||||| ||||    
T  40216493 tttaataaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattattggtgg 40216556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 276
Target Start/End: Complemental strand, 2848 - 2653
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcac 176  Q
    |||||||||||||||||||||||| ||||||||||||||||||   ||||| ||| ||||||||  |||||| || || ||||||    ||||||||||     
T  2848 aatggtgggtgtttcacctatttagcaccatattaaataggcacttccattatggagtataatacatgggtggctctggaagcac--cctctctcttcat 2751  T
Q  177 tttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    ||||  |||  ||||||||| ||||| |||| ||||||||||| |||| ||||||||||||| ||| |||||| || ||||  ||||||  |||||||||    
T  2750 ttttcatgg-tcccatttaataaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattagttatggaccctatttaataatttctt 2653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 15489393 - 15489462
Alignment:
Q  85 gtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  15489393 gtgtttcacctatttagcaccacattaaataggcacccccattgtggagtataatatttgggtgtctatg 15489462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 254
Target Start/End: Original strand, 22746968 - 22747157
Alignment:
Q  63 ctaaggtcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcaca 162  Q
    ||||| ||||| ||||||||||||| |||| ||||||| ||| |||||||||||||| | |  |||||| ||||||||| | |||| ||||| ||||||     
T  22746968 ctaagatcatctataatggtgggtgcttcatctatttagcactatattaaataggca-ctctgttgtggagtataatatatcggtggctatggaagcacc 22747066  T
Q  163 ttgtctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
     | |||||||||| ||||  |||  | ||||||| ||||  |||| |||||||||||  ||| ||||||||||||| ||| |||||||||||    
T  22747067 ctctctctcttcatttttcatgggtcacatttaataaatattaataaaataaataaa-atttgttgaaatgtaatgatataaaattatttgt 22747157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 32183777 - 32183861
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||| |||| ||||||| || ||||||||||||||| ||||||||||| ||||||||| |||||| |||||    
T  32183777 catccacaatggtgggtgcttcatctatttagcatcatattaaataggcacccccattgtggagtataatatatgggtggctatg 32183861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 15134995 - 15134910
Alignment:
Q  190 catttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    ||||||| ||||| |||| |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||  |||||||||    
T  15134995 catttaataaatcttaataaaataaataaattttg-ttgaaatgtaatgatataaaattatttgtggaatctatttaataatttctt 15134910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 21208145 - 21208238
Alignment:
Q  61 ttctaaggtcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||||| || |||| ||||||| ||| ||||||||||||||||| ||||||||||||| ||  ||||||| | ||||||| |||||| |||||    
T  21208145 ttctaagatcgtccacaatggtgtgtgcttcacctatttaacaccgtattaaataggcacccttattgtggagaataatatatgggtggctatg 21208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 15868479 - 15868438
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  15868479 tatagagattagtttgagtaactaactctaactaacttctaa 15868438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 15866667 - 15866627
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttcta 65  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  15866667 tatagagattagtttgagtaactaactctaactaacttcta 15866627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 20969859 - 20969775
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||  |||||||||||| ||||| ||||| |||||| ||||||||||  |||||| || ||||||| ||||    
T  20969859 catccacaatggtgggtacttcacctatttagcaccacattaagtaggcacccccattgtgaagtataacatatgggtgtttatg 20969775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 521165 - 521251
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaa 156  Q
    |||||| |||||||  || || ||||||||| ||||| |||||||| ||||| ||||||||| ||| ||||| || |||||||||||    
T  521165 catccacaatggtgcatgcttaacctatttagcaccacattaaataagcatctccattgtggagtaaaatatatgagtgtctatgaa 521251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 5376961 - 5376923
Alignment:
Q  28 agagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  5376961 agagattagtttgagtaactaactctaactaacttctaa 5376923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 5378816 - 5378778
Alignment:
Q  28 agagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  5378816 agagattagtttgagtaactaactctaactaacttctaa 5378778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 521303 - 521387
Alignment:
Q  191 atttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgtaatttctt 276  Q
    |||||| ||||| |||| || ||||||||||||  ||||||||||||| |||  |||||||||||| ||||||||  |||||||||    
T  521303 atttaataaatcttaataaattaaataaattttg-ttgaaatgtaatgatatataattatttgtgggatctatttaataatttctt 521387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 1088797 - 1088838
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  1088797 tatagagattagtttgactaactaactctaactaacttctaa 1088838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 33866186 - 33866145
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  33866186 tatagagattagtctgagtaactaactctaactaacttctaa 33866145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 33869333 - 33869292
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  33869333 tatagagattagtttaagtaactaactctaactaacttctaa 33869292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 27436433 - 27436373
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtgg 131  Q
    ||||| |||| || |||||||||||||||||||||||| ||||||  || |||||||||||    
T  27436433 atccacaatgatgagtgtttcacctatttaacaccataataaataaacacccccattgtgg 27436373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 32183913 - 32183976
Alignment:
Q  190 catttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    ||||||| ||||| |||| |||||||||| ||||| ||||||||||||| ||| |||||||||||    
T  32183913 catttaataaatcttaataaaataaataa-tttttgttgaaatgtaatgatataaaattatttgt 32183976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 15135117 - 15135051
Alignment:
Q  89 ttcacctatttaacaccatattaaataggcatcc-ccattgtggggtataatatttgggtgtctatg 154  Q
    |||||||||||| ||||| |||||||||||| || ||||||||| ||||||||  |||||| |||||    
T  15135117 ttcacctatttagcaccacattaaataggcaccctccattgtggagtataatacatgggtggctatg 15135051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 9415155 - 9415114
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    ||||||||||||||| | |||| |||||||||||||||||||    
T  9415155 tatagagattagtttcactaactaactctaactaacttctaa 9415114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 15149189 - 15149230
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  15149189 tatagaaattaatttgagtaactaactctaactaacttctaa 15149230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 6190285 - 6190114
Alignment:
Q  56 ctaacttctaaggtcatccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttggg-----tgtc 150  Q
    |||||||| |||  |||||| ||||||||||| ||||||| |||| || |||||||||||| || ||||||||||  |||| |||||||||     ||      
T  6190285 ctaacttcaaagaccatccacaatggtgggtgcttcacctgtttagcatcatattaaatagacacccccattgtgaagtatgatatttgggtgggatggt 6190186  T
Q  151 tatgaaagcacattgtctctcttcactttttgtggaccccatttaaaaaatca-taatgaaataaataaatt 221  Q
    |||| |||||   | ||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||    
T  6190185 tatggaagcaacctctctctcttcacttttcgtggaccgcatttaataaatcattaatgaaataaataaatt 6190114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 43652593 - 43652702
Alignment:
Q  166 tctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctattt 265  Q
    |||||||||||||||| || | ||||||||| |||| || |||||||||||||| | || ||||||||||||| ||| ||||||||| ||  ||||||||    
T  43652593 tctctcttcactttttctgaatcccatttaataaattatgatgaaataaataaaatgttgttgaaatgtaatgatataaaattatttatgatatctattt 43652692  T
Q  266 cgtaatttct 275  Q
     |||||||||    
T  43652693 agtaatttct 43652702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 22705761 - 22705656
Alignment:
Q  170 tcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctatttcgta 269  Q
    ||||||||||||| ||  | ||||| | |||||||||||||||||||||| |||| |||||||||| ||  || ||||||||||||||| |||||| |||    
T  22705761 tcttcactttttgcggctctcatttcataaatcataatgaaataaataaa-ttttgttgaaatgtattgacataaaattatttgtggaacctattttgta 22705663  T
Q  270 atttctt 276  Q
    |||||||    
T  22705662 atttctt 22705656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 9032799 - 9032715
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||||||| | | ||| ||| ||||||||  |||||| |||||    
T  9032799 catccaaaatggtgggtgcttcacctatttaacaccacattaaataggcacctctattatggagtataatacatgggtggctatg 9032715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 19494734 - 19494818
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| |||| ||| || |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||| |||||| |||||    
T  19494734 catccacaatgatggatgcttcatctatttagtaccatattaaataggcacccccattgtggagtataatatatgggtgactatg 19494818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 25322912 - 25323011
Alignment:
Q  156 aagcacattgtctctcttcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtg 255  Q
    |||||| || |||||||||| ||||  |||  ||||||||| ||||| |||| ||||||||||| |||| ||||||||||||| ||| ||||||||||||    
T  25322912 aagcaccttctctctcttcatttttcatgggtcccatttaataaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattatttgtg 25323010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 25322811 - 25322881
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataata 140  Q
    ||||||||||| ||| ||||| ||||||||||||||| |||||||||||| || |||||| | ||||||||    
T  25322811 catccataatgatggatgtttaacctatttaacaccacattaaataggcaccctcattgtagagtataata 25322881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 255
Target Start/End: Complemental strand, 840373 - 840198
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcac 176  Q
    ||||||||||| |||||||| ||| ||||| |||||||||||| |||||||||   | ||||||| |||||| ||||| ||||||  | || |||||||     
T  840373 aatggtgggtgcttcacctacttagcaccacattaaataggca-ccccattgt-aagaataatatatgggtggctatggaagcaccctctcactcttcag 840276  T
Q  177 tttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtg 255  Q
    ||||  |||  ||||| ||| ||||| |||| |||||| |||| | || || |||||||||  ||| ||||||||||||    
T  840275 ttttcatgggtcccatgtaataaatcttaataaaataagtaaa-tgttgttaaaatgtaataatataaaattatttgtg 840198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 16591227 - 16591181
Alignment:
Q  66 aggtcatccataatggtgggtgtttcacctatttaacaccatattaa 112  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||    
T  16591227 aggtcatctataatggtgggtgtttcgcctatttatcaccatattaa 16591181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 29758207 - 29758166
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  29758207 tatagagattagtttgagtaactacctctaactaacttctaa 29758166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 7315321 - 7315255
Alignment:
Q  188 cccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtg 255  Q
    ||||||||| ||||| |||| ||||||||||| |||| ||||||||||||| | | ||||||||||||    
T  7315321 cccatttaataaatcttaataaaataaataaa-ttttgttgaaatgtaatgatgtaaaattatttgtg 7315255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 30471428 - 30471485
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccatt 127  Q
    |||| ||||||||||||| |||||||||||||||||   ||||||||| | |||||||    
T  30471428 catctataatggtgggtgcttcacctatttaacaccgagttaaataggaacccccatt 30471485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 7315466 - 7315371
Alignment:
Q  61 ttctaaggtcatccataatggtgggtgttt--cacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||||| | ||||| ||||||||||| ||  ||| |||||| |||||| |||||||| || || |||||||| ||||||||  |||||| |||||    
T  7315466 ttctaagataatccacaatggtgggtgcttcacacatatttagcaccatgttaaatagacaccctcattgtggagtataatacatgggtggctatg 7315371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 9032651 - 9032580
Alignment:
Q  193 ttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtggaatctattt 265  Q
    |||| ||||| |||| |||||||||||||||  |||||| |||||| ||| ||||||||||||| | ||||||    
T  9032651 ttaataaatcttaataaaataaataaattttg-ttgaaacgtaatgatataaaattatttgtgggacctattt 9032580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 23418863 - 23418947
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| |||| |||||| |||| |||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||| |||||    
T  23418863 catccacaatgatgggtgcttcatctatttaacaccgtattaaataggcacccccattgtggagtataatatatgggtggctatg 23418947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 35378024 - 35377844
Alignment:
Q  76 taatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatt---tgggtgtctatgaaagcacattgtctctct 172  Q
    |||||||||||| |||| |||||||||| ||||||||||||||| | || |||||| | |||||| |   ||||||  |||| ||||||  | ||||||     
T  35378024 taatggtgggtgcttcatctatttaacatcatattaaataggcacctccgttgtggagcataataatatatgggtggatatggaagcaccctctctctca 35377925  T
Q  173 tcactttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    ||| ||||  |||  | ||||||| ||||| |||| |||||||||||||||  ||||||||||||| ||| |||||||||||    
T  35377924 tcatttttcatggctcacatttaataaatcttaataaaataaataaattttg-ttgaaatgtaatgatataaaattatttgt 35377844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 9622473 - 9622405
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataa 138  Q
    |||||| ||||||||||| |||||||||||| ||||| ||||||||| || ||||||||||| ||||||    
T  9622473 catccacaatggtgggtgcttcacctatttagcaccacattaaatagacacccccattgtggagtataa 9622405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 27903561 - 27903636
Alignment:
Q  78 atggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    ||||||||||||||||||||||| ||| | |||||||||||| ||||||||||| ||||||||  |||||| |||||    
T  27903561 atggtgggtgtttcacctatttagcactacattaaataggca-ccccattgtggagtataatacatgggtgactatg 27903636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 39787203 - 39787244
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  39787203 tatagagattagtttgagtaactaactctaactaacttctaa 39787244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 43101030 - 43100959
Alignment:
Q  77 aatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtg 148  Q
    ||||||||||| || ||||||||| ||||| |||||||| ||| || |||||||| |||||| || ||||||    
T  43101030 aatggtgggtgcttaacctatttagcaccacattaaataagcaccctcattgtggagtataacatatgggtg 43100959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 19279431 - 19279515
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||| |||||||||||| || || ||||||||| ||  ||| || ||| ||||||||  |||||| |||||    
T  19279431 catccacaatggtgggtgcttcacctatttagcatcacattaaatagacacaccctttatggagtataatacatgggtggctatg 19279515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 178442 - 178275
Alignment:
Q  81 gtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatgaaagcacattgtctctcttcactttt 180  Q
    ||||||| |||||||||||| |||||| |||||||||||  |||||||| | ||||||||  |||||| ||||| ||||||    ||||| |||| ||||    
T  178442 gtgggtgcttcacctatttagcaccatgttaaataggcactcccattgtagagtataatacatgggtggctatggaagcac--cctctcttttcattttt 178345  T
Q  181 tgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgtg 255  Q
        || ||||||||| ||||| |||| ||||||||||| |||||||||||||||||| ||  |||||| |||||    
T  178344 ----gatcccatttaataaatcttaataaaataaataaa-ttttattgaaatgtaatgatacaaaattagttgtg 178275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 71784 - 71699
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatga 155  Q
    |||||| |||| | ||||||||||||||||| ||||||| |||||||||| || |||| ||| |||||||||||||||| ||||||    
T  71784 catccacaatgattggtgtttcacctatttagcaccatactaaataggcacccacattatggagtataatatttgggtgcctatga 71699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 71666 - 71598
Alignment:
Q  186 accccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    ||||||||||| |||||||||||||||||||||| |||  ||||| |  |||| ||| |||||||||||    
T  71666 accccatttaataaatcataatgaaataaataaaatttagttgaattaaaatgatataaaattatttgt 71598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 551 - 635
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| |||||||  || |||||||||||||||||| |||||||||||| ||||||||||| | ||||||| |||||| |||||    
T  551 catccacaatggtgaatgcttcacctatttaacaccacattaaataggcacccccattgtggagaataatatatgggtggctatg 635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 428287 - 428370
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtggggtataatatttgggtgtctatg 154  Q
    |||||| ||||||||||| |||||||||||| ||||| |||||||||||| ||||||||||| ||||||||  |||||| |||||    
T  428287 catccacaatggtgggtgcttcacctatttagcaccagattaaataggca-ccccattgtggagtataatacatgggtggctatg 428370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 6313 - 6272
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  6313 tatagagattagtttgagtaactaactctaactaacttctaa 6272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 58873 - 58832
Alignment:
Q  25 tatagagattagtttgagtaaccaactctaactaacttctaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  58873 tatagagattagtttgagtaactaactctaactaacttctaa 58832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 22332 - 22272
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtgg 131  Q
    |||||| |||||||| || |||||||||||||||||| ||||||||| || |||||||||||    
T  22332 catccacaatggtggatgcttcacctatttaacaccacattaaatagaca-ccccattgtgg 22272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 50929 - 50989
Alignment:
Q  71 atccataatggtgggtgtttcacctatttaacaccatattaaataggcatccccattgtgg 131  Q
    ||||| |||| || |||||||||||||||||||||||| ||||||  || |||||||||||    
T  50929 atccacaatgatgagtgtttcacctatttaacaccataataaataaacacccccattgtgg 50989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 94291 - 94229
Alignment:
Q  191 atttaaaaaatcataatgaaataaataaatttttattgaaatgtaatggtatgaaattatttgt 254  Q
    |||||| ||||| |||| |||||||||||||||  ||||||||||||| ||| |||||||||||    
T  94291 atttaataaatcttaataaaataaataaattttg-ttgaaatgtaatgatataaaattatttgt 94229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 4671 - 4626
Alignment:
Q  70 catccataatggtgggtgtttcacctatttaacaccatattaaata 115  Q
    |||||| |||||||||| |||||||||||||||| || ||||||||    
T  4671 catccagaatggtgggtatttcacctatttaacatcacattaaata 4626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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