View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_high_2 (Length: 800)
Name: NF19291_high_2
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 341 - 785
Target Start/End: Original strand, 5828268 - 5828714
Alignment:
| Q |
341 |
aataaggagataatcaaccaaacagacaaatcaacagagtgagaatcaataatcaatcaaacataagaagaagcaaccaaagagagaaatcaaaccaaat |
440 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5828268 |
aataaagagataatcaaccaaacagacaaatcaacagagtgagaatcaataataaatcaaacacaagaagaagcaaccaaagagagaaatcaaaccaaat |
5828367 |
T |
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| Q |
441 |
caaacaatcaaccatagaaattgcattgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat |
540 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828368 |
caaacaatcaaccatagaaattgcagtgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat |
5828467 |
T |
|
| Q |
541 |
atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgcgactcgggtaattgtatgtcatgagagagtttgcaattttgt |
640 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828468 |
atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgcgactcgggtaattgtatgtcatgagagagtttgcaattttgt |
5828567 |
T |
|
| Q |
641 |
cctttgtaattttct--gagttgtaaggctttgcagttttactagagaagttatatgagagagtttgcaattttctcctgtaaaaagttgcaatttgagt |
738 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828568 |
cctttgtaattttctgagagttgtaaggctttgcagttttactagagaagttatatgagagagtttgcaattttctcctgtaaaaagttgcaatttgagt |
5828667 |
T |
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| Q |
739 |
aataaaatatttttggtaggagattgtggatgtaggtatgaagtgcc |
785 |
Q |
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| T |
5828668 |
aataaaatatttttgttaagagattgtggatgtaggtatgaagtgcc |
5828714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 5827859 - 5827975
Alignment:
| Q |
16 |
atcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataacttatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827859 |
atcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataacttatta |
5827958 |
T |
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| Q |
116 |
tcttcatatttcccctg |
132 |
Q |
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||||||||||||||||| |
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| T |
5827959 |
tcttcatatttcccctg |
5827975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 5828109 - 5828171
Alignment:
| Q |
185 |
agagagagagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat |
247 |
Q |
| |
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| T |
5828109 |
agagagtgagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat |
5828171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 467 - 588
Target Start/End: Complemental strand, 6853560 - 6853441
Alignment:
| Q |
467 |
tgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcac |
566 |
Q |
| |
|
||||||||||| |||| |||||| || |||||||||| || |||||| |||| | || || | |||||| ||||| ||||||||||| | ||||||||| |
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| T |
6853560 |
tgtcaaagtggatattcatccaagtcgcacatcgggtggtgagaagaaaaaagaggttgaggcttattataaata--gagttatattgtgatttcttcac |
6853463 |
T |
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| Q |
567 |
cataacatctctagtatcttgg |
588 |
Q |
| |
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|| |||||||||||| |||||| |
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| T |
6853462 |
cacaacatctctagtctcttgg |
6853441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 777
Target Start/End: Complemental strand, 6853301 - 6853218
Alignment:
| Q |
692 |
tatgagagagtttgcaattttctcctgtaaaaagttgcaatttgagtaataaaatatttttggtaggagattgtggatgtaggtat |
777 |
Q |
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|||||||| |||| ||||||||| | ||||||| ||| | ||||||||||||| |||||||| | ||||||||||||||| |||| |
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| T |
6853301 |
tatgagagggtttacaattttctacggtaaaaa-ttgtagtttgagtaataaa-tatttttgttgagagattgtggatgtaagtat |
6853218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 581
Target Start/End: Complemental strand, 32496079 - 32496026
Alignment:
| Q |
528 |
ggttattaaaaatatagagttatattgagttttcttcaccataacatctctagt |
581 |
Q |
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|||||||| ||||||||||||| |||||||||||||||| |||| |||||||| |
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| T |
32496079 |
ggttattataaatatagagttaaattgagttttcttcactttaacttctctagt |
32496026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 783
Target Start/End: Complemental strand, 44683387 - 44683294
Alignment:
| Q |
689 |
ttatatgagagagtttgcaattttctcct-gtaaaaagttgcaatttgagtaataaaatatttttggtaggagattgtggatgtaggtatgaagtg |
783 |
Q |
| |
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|||||||||| | ||||||||||||||| ||||||| || || ||||||||||||||||||| | | |||||||| ||||||||||||||||| |
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| T |
44683387 |
ttatatgagaaaccttgcaattttctccttgtaaaaa-ttacatgttgagtaataaaatatttt-gttgagagattgtagatgtaggtatgaagtg |
44683294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 567
Target Start/End: Original strand, 31105937 - 31105967
Alignment:
| Q |
537 |
aaatatagagttatattgagttttcttcacc |
567 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31105937 |
aaatatagagttatattgagttttcttcacc |
31105967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 439
Target Start/End: Original strand, 6901177 - 6901210
Alignment:
| Q |
406 |
agaagaagcaaccaaagagagaaatcaaaccaaa |
439 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
6901177 |
agaagaagcaaccaaagagtgaaatcaaaccaaa |
6901210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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