View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_high_21 (Length: 259)
Name: NF19291_high_21
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 32504526 - 32504298
Alignment:
| Q |
18 |
gcacattcctcaacatggatcccaaaaacacacactaacttgatcttgtaatgttaacacaatgcaagaccattttttatggtaaaacttcattgtaata |
117 |
Q |
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| T |
32504526 |
gcacattcctcaacatggatcccaaaaacacacaccaacttgatcttgtaatgttaacacaatgcaagaccattttttatggtaaaacttcattgtaata |
32504427 |
T |
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| Q |
118 |
tggtactagtttttaagtcccacatcggcacatccagagaaaaatacagtaaatgtccaatataaagtcagaagcgagcttatattttaaccattcgagc |
217 |
Q |
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| T |
32504426 |
tggtagtagtttttaagtcccacatcggcacatccagagaaaaatacagtaaatatccaatataaagtcagaagcgagcctatattttaaccattcgtgc |
32504327 |
T |
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| Q |
218 |
tttcaaatactttttattttgatagcttc |
246 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32504326 |
tttcaaatactttttattttgatagcttc |
32504298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 32500547 - 32500458
Alignment:
| Q |
97 |
tggtaaaacttcattgtaatatggtactagtttttaagtcccacatcggcacatccagagaaaaatacagtaaatgtccaatataaagtc |
186 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||| | | || |||||||||||||| |||||| |||||||||||| |
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| T |
32500547 |
tggtaaaacttcattgtaatatgatagtagtttttaagtcccacatccgtatattgagagaaaaatacagcaaatgttcaatataaagtc |
32500458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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