View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19291_high_25 (Length: 251)

Name: NF19291_high_25
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19291_high_25
NF19291_high_25
[»] chr7 (10 HSPs)
chr7 (1-239)||(31171316-31171554)
chr7 (68-239)||(31152754-31152926)
chr7 (105-243)||(8900669-8900807)
chr7 (75-171)||(757865-757960)
chr7 (187-242)||(32138906-32138961)
chr7 (66-104)||(31152917-31152955)
chr7 (74-211)||(44754967-44755105)
chr7 (142-243)||(23944030-23944132)
chr7 (18-171)||(23944077-23944228)
chr7 (187-239)||(29152350-29152402)
[»] chr4 (4 HSPs)
chr4 (57-241)||(25062358-25062544)
chr4 (75-156)||(22050909-22050990)
chr4 (52-130)||(20512790-20512868)
chr4 (75-159)||(55897608-55897693)
[»] chr2 (9 HSPs)
chr2 (63-212)||(25606411-25606561)
chr2 (69-217)||(28282701-28282854)
chr2 (63-239)||(38576791-38576967)
chr2 (68-169)||(9050219-9050320)
chr2 (187-242)||(16576248-16576303)
chr2 (57-160)||(16576287-16576389)
chr2 (75-158)||(34176761-34176844)
chr2 (76-144)||(9050074-9050142)
chr2 (185-241)||(13712771-13712827)
[»] chr1 (11 HSPs)
chr1 (152-243)||(10775127-10775219)
chr1 (187-242)||(46080971-46081026)
chr1 (75-153)||(7104322-7104400)
chr1 (70-126)||(10775069-10775125)
chr1 (187-239)||(44330463-44330515)
chr1 (208-243)||(44342219-44342254)
chr1 (78-171)||(5500740-5500833)
chr1 (75-144)||(49897927-49897996)
chr1 (75-107)||(3367839-3367871)
chr1 (85-173)||(7104461-7104549)
chr1 (190-242)||(52432664-52432716)
[»] scaffold0136 (1 HSPs)
scaffold0136 (37-159)||(36907-37029)
[»] chr8 (8 HSPs)
chr8 (75-171)||(29969154-29969251)
chr8 (75-242)||(32166655-32166819)
chr8 (75-150)||(29093593-29093668)
chr8 (96-242)||(35574660-35574806)
chr8 (50-159)||(6803876-6803985)
chr8 (68-159)||(6630316-6630407)
chr8 (187-241)||(13149102-13149155)
chr8 (74-156)||(37010282-37010364)
[»] chr5 (8 HSPs)
chr5 (75-159)||(41264430-41264515)
chr5 (75-160)||(2243250-2243334)
chr5 (85-160)||(5205471-5205546)
chr5 (75-158)||(7215403-7215486)
chr5 (187-241)||(17736775-17736829)
chr5 (49-166)||(40483712-40483829)
chr5 (187-236)||(7215322-7215371)
chr5 (190-243)||(14138548-14138601)
[»] chr6 (4 HSPs)
chr6 (110-242)||(32342521-32342655)
chr6 (109-169)||(32047265-32047325)
chr6 (75-168)||(7556040-7556134)
chr6 (79-243)||(20067977-20068141)
[»] chr3 (4 HSPs)
chr3 (137-222)||(31758193-31758278)
chr3 (187-241)||(54437806-54437860)
chr3 (93-243)||(42091810-42091959)
chr3 (75-160)||(51260560-51260643)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 31171554 - 31171316
Alignment:
Q  1 tttcttttatcttttaattttcttgcaattaaataccattttcatgtttaaaaacttcaatcttctacatctgtttcattcaaaatgtgatctccatctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31171554 tttcttttatcttttaattttcttgcaattaaataccattttcatctttagaaacttcaatcttctacatctgtttcattcaaaatgtgatttccatctc 31171455  T
Q  101 tttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtagacttcatcattttggtttttcttacaacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171454 tttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagacttcatcattttggtttttcttacaacc 31171355  T
Q  201 aattaccattttcatcttaaaaacatcaatcttcttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31171354 aattaccattttcatcttaaaaacatcaatcttcttcat 31171316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 31152926 - 31152754
Alignment:
Q  68 catctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31152926 catctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataat 31152827  T
Q  168 gtagacttcatcattttggt-ttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 239  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31152826 gtagacttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 31152754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 8900807 - 8900669
Alignment:
Q  105 gtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtagacttcatcattttggttttt-cttacaaccaat 203  Q
    ||||||||||||||| |||||||||||||  | ||||||| ||||||||||||||  |||||||||| ||||| |||||| |||||| |||||||  |||    
T  8900807 gtttcataatcgaattctacttgttattagggataaatta-ccccaattcatcaatggataatgtaggcttcaacatttttgttttttcttacaataaat 8900709  T
Q  204 taccattttcatcttaaaaacatcaatcttcttcatctct 243  Q
    ||||||||| |||| || |||| ||| |||||||||||||    
T  8900708 taccatttttatctcaagaacaacaaacttcttcatctct 8900669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 757960 - 757865
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtag 171  Q
    ||||||||| ||||||||| |||||| ||| ||  ||||| ||||||||||| |||||| | |||||||||||| |||||||||| |||||| ||||    
T  757960 ttcattcaacatgtgatcttcatctccttcattctataattgaatcctacttattatta-atgtaaattatcccaaattcatcaaatgataaagtag 757865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 32138961 - 32138906
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctc 242  Q
    ||||||||| || ||||||||||||||||||||| ||||||||  |||||||||||    
T  32138961 tttttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctc 32138906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 31152955 - 31152917
Alignment:
Q  66 tacatctgtttcattcaaaatgtgatctccatctctttc 104  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  31152955 tacatctgtttcattcaaaatgtgatctccatctgtttc 31152917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 44754967 - 44755105
Alignment:
Q  74 tttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtagac 173  Q
    |||||||||| ||||||||| |||||| || | | ||||||||||| |  ||| ||||||  ||||||||  | | ||||||||||| ||||||||||      
T  44754967 tttcattcaacatgtgatcttcatctcctttgatccataatcgaattcggcttattattaggggtaaattgcctcgaattcatcaagggataatgtaggt 44755066  T
Q  174 ttcatcattttgg-tttttcttacaaccaattaccattt 211  Q
    ||||  ||||||| |||||||||||| ||| || |||||    
T  44755067 ttcactattttggttttttcttacaatcaaatatcattt 44755105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 23944030 - 23944132
Alignment:
Q  142 ttatccccaattcatcaagtgataatgtagacttcatcattt-tggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatc 240  Q
    |||||| |||||||||||| | ||||||||   ||| |||||  | ||||||||||||  | || ||||||||||||||| |||||||| ||||||| ||    
T  23944030 ttatcctcaattcatcaaggggtaatgtaggtctcaccatttaagttttttcttacaattagttgccattttcatcttaagaacatcaaacttcttcttc 23944129  T
Q  241 tct 243  Q
    |||    
T  23944130 tct 23944132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 23944077 - 23944228
Alignment:
Q  18 ttttcttgcaattaaataccattttcatgtttaaaaacttcaatcttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcga 117  Q
    ||||||| ||||||  | |||||||||| || || ||| |||| ||||| | ||| |||||||||| ||||||| |||||||| ||  || || ||||||    
T  23944077 ttttcttacaattagttgccattttcatctt-aagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcga 23944175  T
Q  118 atcctacttgttattataggtaaattatccccaattcatcaagtgataatgtag 171  Q
    ||| ||||| | || |  ||||| | ||||| ||||||||||| ||||||||||    
T  23944176 atcatacttatcatcaggggtaa-tcatcccaaattcatcaagggataatgtag 23944228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 29152402 - 29152350
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 239  Q
    |||||||||||| || |||| |||||||||| || |||||||| |||||||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 25062358 - 25062544
Alignment:
Q  57 tcaatcttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcat 156  Q
    |||| ||||| |||||| |||||| || ||||||||| |||||| || ||| ||||||| |||||||||||||||||  ||||||||| || ||||||||    
T  25062358 tcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctcaattcat 25062457  T
Q  157 caagtgataatgtagacttcatcattttgg--tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatct 241  Q
    ||||  ||||||||| ||||| || |||||  |||||||||||| |||||||| ||||||||| || || ||||| |||||||||||    
T  25062458 caaggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 22050909 - 22050990
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcat 156  Q
    ||||||||| ||||||||| |||||| ||| ||||| ||||||||| || || | ||||  ||||||||| |||||||||||    
T  22050909 ttcattcaacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcattaagggtaaattacccccaattcat 22050990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 20512868 - 20512790
Alignment:
Q  52 aaacttcaatcttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgtta 130  Q
    |||| |||| ||||| |||||  |||||| || |||| |||||||| || ||||||||||||||||||| || ||||||    
T  20512868 aaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaatcatatttgtta 20512790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 55897608 - 55897693
Alignment:
Q  75 ttcattcaaaatgtgatctccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaa 159  Q
    ||||||||| || |||||| ||||||||| |||| || |||  ||| |||||||||||||  |||||| ||||| |||||||||||    
T  55897608 ttcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggtaaactatcctcaattcatcaa 55897693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 25606411 - 25606561
Alignment:
Q  63 ttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtg 162  Q
    |||| |||||||||||||||| || |||| | |||||| |||||| ||||| |||||||||||||||||||  ||||||||| || ||||||||||   |    
T  25606411 ttcttcatctgtttcattcaacatatgatatacatctccttcgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcatcagaag 25606510  T
Q  163 ataatgtagacttcatcattttggt-ttttcttacaaccaattaccatttt 212  Q
    |||| ||||| |||| |||||| || ||||||||||| |||||| ||||||    
T  25606511 ataacgtagatttcaccattttagtcttttcttacaatcaattagcatttt 25606561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 28282701 - 28282854
Alignment:
Q  69 atctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtga----- 163  Q
    ||||| ||||||||| |||||||||||||||| |||||| ||||||| |||  ||||||||||||  ||||||||| |  ||||||||||| |||         
T  28282701 atctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa-tgaataat 28282799  T
Q  164 taatgtagacttcatcattttg-gtttttcttacaaccaattaccattttcatct 217  Q
    |||||||| ||||| |||||||  |||||||||||| |||||| |||||||||||    
T  28282800 taatgtaggcttcaccattttgattttttcttacaatcaattatcattttcatct 28282854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 38576967 - 38576791
Alignment:
Q  63 ttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtg 162  Q
    |||| ||||| |||||||||| ||||||| ||||||||||||||  ||||||| |||| || |||| ||||   |||||||| ||||||||||| ||| |    
T  38576967 ttcttcatctctttcattcaacatgtgatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaatta-ccccaattcataaaggg 38576869  T
Q  163 ataatgtagacttcatc-attttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 239  Q
     |||||||| | ||||| ||   | |||||||||||| || ||||||||||||||| || |  ||||| |||||||||    
T  38576868 gtaatgtaggcctcatcgataaggttttttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 9050320 - 9050219
Alignment:
Q  68 catctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataat 167  Q
    ||||| ||||||| || || |||| | |||||  || ||||||||||||||||||||| || |||| |||||||||| || |||||||||||| ||||||    
T  9050320 catctctttcatttaacatttgatttacatcttctttgtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaagagataat 9050221  T
Q  168 gt 169  Q
    ||    
T  9050220 gt 9050219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 16576248 - 16576303
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctc 242  Q
    |||||||||||| |||||||||||||| ||| || |||||||| ||||||||||||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctc 16576303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 16576287 - 16576389
Alignment:
Q  57 tcaatcttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcat 156  Q
    |||| ||||| |||||  ||||||||| ||||||||||| |||| |||||| || ||||||||| ||||| | ||||  |||||||||  ||||||||||    
T  16576287 tcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaaatta-acccaattcat 16576385  T
Q  157 caag 160  Q
    ||||    
T  16576386 caag 16576389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 34176761 - 34176844
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatca 158  Q
    |||||| || || |||||| |||||||||||||||||||||||||| || || | ||||    | |||||||||||||||||||    
T  34176761 ttcatttaacatatgatcttcatctctttcgtttcataatcgaatcatatttttcattaggattgaattatccccaattcatca 34176844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 9050142 - 9050074
Alignment:
Q  76 tcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaatta 144  Q
    |||||||| || ||||||||||||| |||||| || ||||||||| | ||||| ||||  |||||||||    
T  9050142 tcattcaacatatgatctccatctcattcgttacaaaatcgaatcatgcttgtcattaagggtaaatta 9050074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 13712827 - 13712771
Alignment:
Q  185 ggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatct 241  Q
    |||||||||||| | || ||||||||| |||||||| |||||||| |||||| ||||    
T  13712827 ggtttttcttactatcagttaccatttccatcttaagaacatcaaacttctttatct 13712771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 10775127 - 10775219
Alignment:
Q  152 ttcatcaagtgataatgtagacttcatcattttggttttt-cttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctct 243  Q
    ||||||||| ||||  |||||||||| |||||| |||||| |||| || ||||||||||||||||||||| |||||||| |||||||||||||    
T  10775127 ttcatcaagagatatggtagacttcaccattttagttttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctct 10775219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 46080971 - 46081026
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctc 242  Q
    |||||||||||| |||||||||||||||||| || ||||| || ||||||||||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctc 46081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 153
Target Start/End: Original strand, 7104322 - 7104400
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaatt 153  Q
    ||||||||| |||| || | |||||||||||||||| ||||||||| ||||||| |||| | |||| ||| ||||||||    
T  7104322 ttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 10775069 - 10775125
Alignment:
Q  70 tctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctactt 126  Q
    |||||||||||||| ||||||||| ||| |  |||||| ||||||||||||||||||    
T  10775069 tctgtttcattcaacatgtgatcttcattttcttcgttccataatcgaatcctactt 10775125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 44330463 - 44330515
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 239  Q
    ||||||||||||||| ||||||||||||| | ||||||||||  |||||||||    
T  44330463 tttttcttacaaccatttaccattttcatatcaaaaacatcacacttcttcat 44330515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 44342254 - 44342219
Alignment:
Q  208 attttcatcttaaaaacatcaatcttcttcatctct 243  Q
    ||||||||||||||||||||||||||||| ||||||    
T  44342254 attttcatcttaaaaacatcaatcttctttatctct 44342219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 5500833 - 5500740
Alignment:
Q  78 attcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtag 171  Q
    |||||| |||||||||||||||  ||||||||| |||| |||  |||   |||||| || |||||||||  |||||||||||| | ||||||||    
T  5500833 attcaacatgtgatctccatcttattcgtttcagaatcaaataatacagattattagagataaattatcttcaattcatcaagaggtaatgtag 5500740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 49897927 - 49897996
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaatta 144  Q
    ||||||||| |||||||||||||||| || |||  | ||||||||| || |||| |||| ||||||||||    
T  49897927 ttcattcaacatgtgatctccatctcctttgttctagaatcgaatcataattgtcattagaggtaaatta 49897996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 3367839 - 3367871
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtt 107  Q
    ||||||||| |||||||||||||||||||||||    
T  3367839 ttcattcaacatgtgatctccatctctttcgtt 3367871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 7104461 - 7104549
Alignment:
Q  85 atgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtagac 173  Q
    |||| |||| ||| || ||||||||| ||| ||||| ||||||| ||||| | ||||  | ||||||||||||||| | ||||||||||    
T  7104461 atgtaatctacatttccttcgtttcaaaattgaatcatacttgtcattatggctaaaccacccccaattcatcaaggggtaatgtagac 7104549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 52432664 - 52432716
Alignment:
Q  190 ttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctc 242  Q
    |||||| || |||||||||||||||||| || ||||| || ||||||||||||    
T  52432664 ttcttataatcaattaccattttcatctcaagaacattaaacttcttcatctc 52432716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 37029 - 36907
Alignment:
Q  37 cattttcatgtttaaaaacttcaatcttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattatag 136  Q
    ||||||||| || ||| || ||||  |||| |||||  || |||||| ||||||||| |||||| || |||||||||||||||||||||| |||||||      
T  37029 cattttcatcttaaaacacatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatcctacttattattatgt 36930  T
Q  137 gtaaattatccccaattcatcaa 159  Q
    |||||||| | ||||||||||||    
T  36929 gtaaattacctccaattcatcaa 36907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 29969154 - 29969251
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttatt-ataggtaaattatccccaattcatcaagtgataatgtag 171  Q
    ||||||||| ||||||| | ||||||||||||| ||||||||||| |||||||| ||| |  |||||||||||| |||||||||||| | ||||||||    
T  29969154 ttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaaggggtaatgtag 29969251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 242
Target Start/End: Complemental strand, 32166819 - 32166655
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtagact 174  Q
    |||||| || ||||||| | ||||||||||||| || ||||||||| ||||||| |||| ||||||||||  |||||||||||||   | ||||||  |     
T  32166819 ttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgc- 32166721  T
Q  175 tcatcattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctc 242  Q
    |||||    | ||||||||||| | |||||| ||||||||||| || |||||||| ||||||||||||    
T  32166720 tcatc--gatagtttttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctc 32166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 29093593 - 29093668
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatcccca 150  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||| |||||| ||||   ||||||||| |||||    
T  29093593 ttcattcaacatgtgatctccatctctttcgttccataatcaaatcatacttggtattgagggtaaattaccccca 29093668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 35574806 - 35574660
Alignment:
Q  96 atctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtagacttcatcattttggtttttctta 195  Q
    |||||||||||| || ||||||||| || |||| ||||  ||||||||| || |||||||||||   |||||| |||| ||||   |  |||||||||||    
T  35574806 atctctttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagacctcattgatagggtttttctta 35574707  T
Q  196 caaccaattaccattttcatcttaaaaacatcaatcttcttcatctc 242  Q
    |||  | |||| ||||||||||||| ||||||||  || ||||||||    
T  35574706 caattagttacgattttcatcttaagaacatcaaattttttcatctc 35574660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 6803985 - 6803876
Alignment:
Q  50 aaaaacttcaatcttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatcccc 149  Q
    |||||| |||| |||||  |||| |||||||||  ||||| | |||||||| ||| ||||| |||| |||||||||||| ||||  |||||||||  |||    
T  6803985 aaaaacatcaaacttctttatctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactccc 6803886  T
Q  150 aattcatcaa 159  Q
    ||||||||||    
T  6803885 aattcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 6630407 - 6630316
Alignment:
Q  68 catctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaa 159  Q
    ||||| |||||||||| ||||| | |||||||| ||| ||||| |||| |||||||||||| ||||  |||||||||  | |||||||||||    
T  6630407 catctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 13149155 - 13149102
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatct 241  Q
    |||||||||| ||||||||||| |||||||| |||||||||||  ||||||||||    
T  13149155 tttttcttacgaccaattacca-tttcatctcaaaaacatcaaatttcttcatct 13149102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 37010364 - 37010282
Alignment:
Q  74 tttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcat 156  Q
    ||||||| || |||||||||| ||||| ||| || |||||||||||| || |||||||||  || || ||| |||||||||||    
T  37010364 tttcatttaacatgtgatctctatctccttcattccataatcgaatcatatttgttattaggggcaatttacccccaattcat 37010282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 41264430 - 41264515
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtt-tcataatcgaatcctacttgttattataggtaaattatccccaattcatcaa 159  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||||| || ||||||||| |||||||||| ||  ||||||||||    
T  41264430 ttcattcaacatgtgatcttcatctctttcgttatcataatcgaatcataattgttattagaggtaaattaaccttaattcatcaa 41264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 2243334 - 2243250
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaag 160  Q
    ||||||||| |||||||||||||||  ||||||  | ||||||||  ||||||| |||| |||||||||| |||||||||||||||    
T  2243334 ttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcattagaggtaaatta-ccccaattcatcaag 2243250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 5205546 - 5205471
Alignment:
Q  85 atgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaag 160  Q
    ||||||||||||||| |||||||| ||||||||||| |  |||| ||||  |||||| || |||||||||||||||    
T  5205546 atgtgatctccatctatttcgttttataatcgaatcatgattgtcattaagggtaaaatacccccaattcatcaag 5205471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 7215486 - 7215403
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatca 158  Q
    ||||||||| ||||||||| ||||||||||||| || || || ||| || ||||||||| | ||||||||| | ||||||||||    
T  7215486 ttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttattagatgtaaattattctcaattcatca 7215403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 17736829 - 17736775
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatct 241  Q
    ||||||||||||||||||||||||||||||| || || || || |||||||||||    
T  17736829 tttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatct 17736775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 40483712 - 40483829
Alignment:
Q  49 taaaaacttcaatcttctacatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccc 148  Q
    ||||||| |||| ||||| |||||   |||||||| ||||||||| |||||| |||||| || ||||||||| ||||| | |||   ||||| ||| ||     
T  40483712 taaaaacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcattgggggtaatttaccct 40483811  T
Q  149 caattcatcaagtgataa 166  Q
    |||||||||||| |||||    
T  40483812 caattcatcaagagataa 40483829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttctt 236  Q
    |||||||||||| ||| |||||||||||||| || |||||||| ||||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 14138548 - 14138601
Alignment:
Q  190 ttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctct 243  Q
    ||||||||| ||||||||||||||||||||| || ||||| |||  ||||||||    
T  14138548 ttcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctct 14138601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 32342521 - 32342655
Alignment:
Q  110 ataatcgaatcctacttgttattataggtaaattatccccaat--tcatcaagtgataatgtagacttcatcattttggtttt-tcttacaaccaattac 206  Q
    ||||||||||| || |||| ||||  | ||||||| |||||||  |||||||| ||| |||||| | ||| |||||| ||||| |||||||| ||||||     
T  32342521 ataatcgaatcatatttgtcattagcgataaatta-ccccaatgttcatcaagggatgatgtaggcctcaccattttagttttttcttacaatcaattat 32342619  T
Q  207 cattttcatcttaaaaacatcaatcttcttcatctc 242  Q
    ||||||||||| ||||||||||| ||| ||||||||    
T  32342620 cattttcatctcaaaaacatcaaactttttcatctc 32342655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 32047265 - 32047325
Alignment:
Q  109 cataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgt 169  Q
    |||||| ||||||||||| | |||| ||||||||||||| |||||||||||| ||||||||    
T  32047265 cataattgaatcctacttatcattagaggtaaattatcctcaattcatcaagggataatgt 32047325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 7556134 - 7556040
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtt-tcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatg 168  Q
    ||||||||| ||||||||| | | ||||||||| ||||||||||||| || |||||||||  | ||||||| || |||||||||||  |||||||    
T  7556134 ttcattcaacatgtgatcttcctatctttcgttatcataatcgaatcatagttgttattagggataaattaccctcaattcatcaatggataatg 7556040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 243
Target Start/End: Original strand, 20067977 - 20068141
Alignment:
Q  79 ttcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtagacttcat 178  Q
    ||||| ||||||||| |  ||| |||||| ||||||||||||||||||||  |||  ||||||||| |  |||||||||||  || ||||||  | ||||    
T  20067977 ttcaacatgtgatcttcccctcattcgttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaaaggaaaatgtaagcctcat 20068076  T
Q  179 -cattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctct 243  Q
     |||  || |||||||||||| | | |||||||||||| |  | |||||||| |||| ||||||||    
T  20068077 ccatagtgctttttcttacaatc-agtaccattttcatgtagagaacatcaaacttcctcatctct 20068141  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 31758193 - 31758278
Alignment:
Q  137 gtaaattatccccaattcatcaagtgataatgtagacttcatcattttggtttttcttacaaccaattaccattttcatcttaaaa 222  Q
    |||||||| |||  ||||||||||  ||||| |||| || | | |||| ||||||||||||| |||||||||||||||||||||||    
T  31758193 gtaaattaccccttattcatcaaggaataatatagattttaccttttttgtttttcttacaatcaattaccattttcatcttaaaa 31758278  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 54437806 - 54437860
Alignment:
Q  187 tttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatct 241  Q
    |||||||||||| || |||||||||| |||| ||||||||||| |||||||||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 243
Target Start/End: Complemental strand, 42091959 - 42091810
Alignment:
Q  93 tccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaagtgataatgtagacttcatcattttggttttt- 191  Q
    ||||||||||||||| ||||||| | || ||||||| ||||  ||||||||| ||||||||| ||||| | || ||||    ||| ||   || |||||     
T  42091959 tccatctctttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcacca--atgctttttc 42091862  T
Q  192 cttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatctct 243  Q
    |||||||  ||||| ||||||||||| ||||||||||| ||| |||||||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctct 42091810  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 51260643 - 51260560
Alignment:
Q  75 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattatccccaattcatcaag 160  Q
    ||||||||| ||||||| ||||| |||||| ||| | ||||||||||||||| | || | |||||||| | |||||||||||||||    
T  51260643 ttcattcaacatgtgatttccatatctttcattttagaatcgaatcctacttatcatga-aggtaaatca-ccccaattcatcaag 51260560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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