View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_high_26 (Length: 250)
Name: NF19291_high_26
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 40546324 - 40546467
Alignment:
| Q |
97 |
ctcaaattttagaatctaaaaatcaaaggtcattatggatttttaagagcgcacaagaagcaagtaaaagatggaataagaaattctccaaagtcaatat |
196 |
Q |
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| T |
40546324 |
ctcaaattttaaaatctaaaaatcaaaggtcattatggatttttaagagcgcacaagaagcaagtaa--gatggaataagaaattctccaaagtcaatat |
40546421 |
T |
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| Q |
197 |
attaaaatgagataggggacctaagtttgaaccaagcagtattatc |
242 |
Q |
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| T |
40546422 |
attaaaatgagataggggacctaagtttgaaccaagccgtattatc |
40546467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40546098 - 40546196
Alignment:
| Q |
1 |
cttttgttatcattatcaaacacgaattcaatagtaataaacaattttaactcacgctttcgcaaaatcttttgaaatcaaaaaatgctatttaccctc |
99 |
Q |
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| T |
40546098 |
cttttgttatcattatcaaacacgaattcaatagtaataaacaattttaactcacgctttcgcaaaatcttttgaaatcaaaaaatgctatttaccctc |
40546196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 29799467 - 29799556
Alignment:
| Q |
9 |
atcattatcaaacacgaattcaatagtaataaacaattttaactcacgctttcgcaaaatcttttgaaatcaaaaaatgctatttaccctc |
99 |
Q |
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| T |
29799467 |
atcattagcaaacacga-ttcaatagtcataaacgattttaactcccgctttcctaaaatcttttgaaattgaaaaatgctattcaccctc |
29799556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 29801524 - 29801611
Alignment:
| Q |
9 |
atcattatcaaacacgaattcaatagtaataaacaattttaactcacgctttcgcaaaatcttttgaaatcaaaaaatgctatttaccc |
97 |
Q |
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| T |
29801524 |
atcattatcaagcatga-ttcaatagtcataaacgattttaacgtccactttcccaaaatctttgtaaatcaaaaaatgatattcaccc |
29801611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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