View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19291_high_28 (Length: 249)

Name: NF19291_high_28
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19291_high_28
NF19291_high_28
[»] chr5 (3 HSPs)
chr5 (144-240)||(32563851-32563947)
chr5 (1-54)||(32563759-32563812)
chr5 (85-124)||(32563812-32563851)
[»] chr3 (1 HSPs)
chr3 (161-206)||(28859204-28859249)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 32563851 - 32563947
Alignment:
Q  144 ccaataatggtgaatgaagccgacctcttttccatgcctaaatcaaataatgtaattgacttgtcgacttgacgtcaatatcatcatcgtacctttg 240  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32563851 ccaataatgttgaatgaagccgacctcttttccatgcttaaatcaaataatgtaattgacttgttgacttgacgtcaatatcatcatcgtacctttg 32563947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32563759 - 32563812
Alignment:
Q  1 tttcaaatacgtattttaatcaaacccgtgcatttagtgaagattcctagtatt 54  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  32563759 tttcaaatacgaattttaatcaaacccgtgcgtttagtggagattcctagtatt 32563812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 32563812 - 32563851
Alignment:
Q  85 ttatactgtgctttttggtagcttcctttcacattccacc 124  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32563812 ttatactgtgctttttggtagcttcctttcacattccacc 32563851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 28859249 - 28859204
Alignment:
Q  161 agccgacctcttttccatgcctaaatcaaataatgtaattgacttg 206  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||    
T  28859249 agccgaccacttttccatgctcaaatcaaataatgtaattgacttg 28859204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University