View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_high_29 (Length: 249)
Name: NF19291_high_29
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35442705 - 35442469
Alignment:
| Q |
1 |
cgcataaaattactttctctcactacnnnnnnnntcttgatctacagctgaaaacacctgagtgtactgacaacggtgatgaatgatattcatcgatgta |
100 |
Q |
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| T |
35442705 |
cgcataaaattactttctctcattacaaaaaatttctagatctacagctgaaaacacctgagtgtactgataacggtgaagaatgatattcattgatgta |
35442606 |
T |
|
| Q |
101 |
gaactcatattctctgagtggcttatggtttacttatagacaaagagacacatgaataaactaaatttacattgatatcatgagtttgtacataagtatg |
200 |
Q |
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||||||||||||||| |||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
35442605 |
gaactcatattctctaagtggcttat-gcttacttatagacaaagagacacataaataaactaaatttacattgatatcacgagtttgtacataag--tg |
35442509 |
T |
|
| Q |
201 |
ggtttacaattgaaggagagattgtaagagttaagtatta |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35442508 |
ggtttacaattgaaggagagattgtaagagttaagtatta |
35442469 |
T |
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