View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19291_high_32 (Length: 237)
Name: NF19291_high_32
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_high_32 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 34942899 - 34943120
Alignment:
| Q |
16 |
aagatcaacattcaattatgcacttacgtatagtgactttaaaagttaaactactgtcaataaatcaaaattgatcgatgacaatgatacatgataagac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34942899 |
aagatcaacattcaattatgcacttacgtatagtgactttgaaagttaaactactgtcaataaatcaaaattgatcgatgacaatgatacatgataagac |
34942998 |
T |
|
| Q |
116 |
tgaatttgaaattcatagcaaccaaaagtgacactatctcaaaagactaaaatcaaaatatttttctccatcaacaaagtagcatcgccaacaaaaccat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34942999 |
tgaatttgaaattcatagcaaccaaaagtgacactagctcaaaagactaaaatcaaaatatttttctccatcaacaaagtagcatcgccaacaaaaccat |
34943098 |
T |
|
| Q |
216 |
tactgacaaagttccacaaccc |
237 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34943099 |
tactgacaaagttccacaaccc |
34943120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University