View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_high_9 (Length: 403)
Name: NF19291_high_9
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 36483574 - 36483202
Alignment:
| Q |
19 |
agtaaacaccagccaaacgacaagtaacgatcatgatttctagtaatgatactagcaagagcttcagcaaccggtatgaaaagaagctcgtcttgaaaaa |
118 |
Q |
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| T |
36483574 |
agtaaacaccagccaaacgacaagtaacgatcatgatttctagtaatgatactagcaagagcttcagcaaccggtatgaaaagaagctcgtcttgaaaaa |
36483475 |
T |
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| Q |
119 |
gccagttcaacagaataatagcttgtccactgtgctttgagtccttacatttcaacgactacgaatacagtcaaacaaacacggtattacaaaaaacgaa |
218 |
Q |
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| T |
36483474 |
gccagttcaacagaataatagcttgtccactgtgctttgagtccttacatttcaacgactacgaatacagtcaaacaaacacggtattacaaaaaacgaa |
36483375 |
T |
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| Q |
219 |
aattgattgnnnnnnnnnnnnngtggaggagattgagattgaattacggagtggatgattggaagaaggagttgatcgaatgaacggttgtgattaacgg |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36483374 |
aattgattg--aaaaaaaaaaagtggaggagattgagattgaattacggagtggatgattggaagaaggagttgatcgaatgaacggttgtgattaacgg |
36483277 |
T |
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| Q |
319 |
cgtcggtgacgtaggtctggaagaagcgtagagaatcgtggagagaggcggttggagaaggtgaatgtgatgatg |
393 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36483276 |
cgtcggtgacgtaggtgtggaagaagcgtagagaatcgtggagagaggcggttggagaaggtgaatgtgatgatg |
36483202 |
T |
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