View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_1 (Length: 870)
Name: NF19291_low_1
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 171 - 640
Target Start/End: Original strand, 43062886 - 43063354
Alignment:
| Q |
171 |
aaaccgcatggtgaattatctgaagctatgtttcacagatatgaatcgtggaccaatagtcatcatgttttcactattccttctgttaacgttcacatgc |
270 |
Q |
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| T |
43062886 |
aaaccgcatggtgaattatctgaagctatgtttcacagatatgaattgtggaccaataatcatcatgttttcactattccttctgttaatgtagatatgc |
43062985 |
T |
|
| Q |
271 |
aaagatattagatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacac |
370 |
Q |
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| T |
43062986 |
aaagatattggatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacac |
43063085 |
T |
|
| Q |
371 |
attgcaaaaagaagcattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatcctgaacacaa |
470 |
Q |
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| T |
43063086 |
attgcaaaaagaagcattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatcctgaacacaa |
43063185 |
T |
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| Q |
471 |
cagtttnnnnnnngaaagataatttgataagaatcaatattcaacaatttggtaaaccacatggaaaccatcctaagaggaccacagccttttccataag |
570 |
Q |
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| T |
43063186 |
cagtttaaaaaaa-aaagataatttgataagaatcaatattcaacaatttggtaaaccacatggaaaccatcctaagaggaccacaaccttttccataag |
43063284 |
T |
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| Q |
571 |
aaacaccagaagatcctctaacattattgcagtgatcatatcctgatcagccaccttgtgcagggaacct |
640 |
Q |
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| T |
43063285 |
aaacaccagaagatcctctaacattattgcagtgatcatatcctgatcagccaccttgtgcagggaacct |
43063354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 639 - 855
Target Start/End: Original strand, 43063381 - 43063597
Alignment:
| Q |
639 |
ctttggcatcaacataagcaatgccactaagttgaccttcttgttgtaaaactaaggaataaaccttgtcaattggaggcagctttattaagaagaattt |
738 |
Q |
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| T |
43063381 |
ctttggcatcaacataagcaatgcaactaagttgaccttcttgttgtaaaactaaggaataaaccttgtcaattggaggcagctttattaagaagaattt |
43063480 |
T |
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| Q |
739 |
ttcatttaaattgttcaagaagcttacaaaacattctgaatttcgttacaactcgatgtcgcaaacatccagaagaatatttcacagaacacatacaatc |
838 |
Q |
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| T |
43063481 |
ttcatttaaattgttcaagaagcttacaaaacattcagaatttcgttagaactcgatgtcgcaaatatccagaagaatatttcacagaacacatacaatc |
43063580 |
T |
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| Q |
839 |
tttaatagggcataaag |
855 |
Q |
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| T |
43063581 |
tttaatagggcataaag |
43063597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 43062758 - 43062883
Alignment:
| Q |
18 |
tatgatactgatcatagattcatagggactttctgagaaaaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgatt |
117 |
Q |
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| T |
43062758 |
tatgatactgatcatagattcatagggactttctgagaaaaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgatt |
43062857 |
T |
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| Q |
118 |
gatgttctcattagccaattcctcaa |
143 |
Q |
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| T |
43062858 |
gatgttctcattagccaattcctcaa |
43062883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 43184178 - 43184082
Alignment:
| Q |
271 |
aaagatattagatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacac |
370 |
Q |
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| T |
43184178 |
aaagatattggatacatgtttgagaatcttataataaggatgaccta-------tatagtgccaaagttcaaaagaattggaattacaagtattagacac |
43184086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 40179145 - 40179058
Alignment:
| Q |
57 |
aaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgattgatgttctcattagccaattcctcaaaa |
145 |
Q |
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| T |
40179145 |
aaatgcactttccattttggattgaactggtagtcctattttattct-gtccaatttgattgatgttctcattagccaattccacaaaa |
40179058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 805 - 855
Target Start/End: Complemental strand, 43182716 - 43182666
Alignment:
| Q |
805 |
atccagaagaatatttcacagaacacatacaatctttaatagggcataaag |
855 |
Q |
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| T |
43182716 |
atccacaagaatatttcacagaacacatacaatctttaatacggcataaag |
43182666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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