View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_13 (Length: 386)
Name: NF19291_low_13
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 51543444 - 51543090
Alignment:
| Q |
14 |
cacagacagtaaccatactatggtttacaaagttgtatgattatactattatatgatccataataatacatacaaagcagcacactcactatgccttata |
113 |
Q |
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| T |
51543444 |
cacagacaataaccatactatggtttacaaagttgtatgattatactattatatgatccataataatacatacaaagcagcacactcactatgccttata |
51543345 |
T |
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| Q |
114 |
cataaagggtttatatttgccaatagcttgactcaacccatgaatagctccaattgctgcagccaatgacacaagtaaacagaaaaggctcaatgtttga |
213 |
Q |
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| T |
51543344 |
cataaaaggtttatatttgccaatagcttgactcaacccatgaatagctccaattgctgcagccaatgacacaagtaaacagaaaaggctcaatgtttga |
51543245 |
T |
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| Q |
214 |
agcccaaaccaacgaaatgttccttttctgatcttttgtctcacaatgtacatctccaccggaaaatacaccactgaaggccaaaacccaagggcaccaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51543244 |
agcccaaaccaacgaaatgttccttttctgatcttttgtctcacaatgtacatctccaccggaaaatacaccactgaaggccaaaacccaagggcaccaa |
51543145 |
T |
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| Q |
314 |
gaagagcaatcatgtcattgaaaaagggtattgccatggctagaacagttaccac |
368 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51543144 |
gaagggcaatcatgtcattgaaaaagggcattgccatggctagaacagttaccac |
51543090 |
T |
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