View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_14 (Length: 354)
Name: NF19291_low_14
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 31172163 - 31171822
Alignment:
| Q |
1 |
ctagtatcatacagttttggcataattttctgaagatgctaaatatccattttgtgacagaaggtctatagtcttgtttttagggtttaaggtcaaaagt |
100 |
Q |
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| T |
31172163 |
ctagtatcatacagttttggcataattttctgaagatgctaaatatccattttgtgacagaaggtctatagtcttgtttttagggtttaaggtcaaaagt |
31172064 |
T |
|
| Q |
101 |
ctttgttaaccaattattacgattatatgtcactggatatagtttctaatatattatatgctgtcgtttgattaacatcaaaacaaactacttatttatc |
200 |
Q |
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| T |
31172063 |
ctttgttaaccaattattacgattatatgtcactggatatagtttctaatatattatatgctgtcgtttgattaacatcaaaacaaactacttatttatc |
31171964 |
T |
|
| Q |
201 |
aatcaaaaagaagactaacagtcccagttggtttagtaaaagataaataaaaggtagttgttgtggataagacaatagagatagaaacnnnnnnntatat |
300 |
Q |
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| T |
31171963 |
aaccaaaaagaagactaacagtcccagttggtttagtaaaagataaataaaaggtagttgttgtggataagacaatagagatagaaacaaaaaaatttat |
31171864 |
T |
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| Q |
301 |
ttaaagagactgtggtttttagcaaaagaaaaaagagactgt |
342 |
Q |
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| T |
31171863 |
ttaaagagactgtggtttttagcaaaagaaaaaagagactgt |
31171822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 31071664 - 31071589
Alignment:
| Q |
90 |
aggtcaaaagtctttgttaaccaattattacgattatatgtcactggatatagtttctaatatattatatgctgtc |
165 |
Q |
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| T |
31071664 |
aggtcaatagtctttgttaaccaattattaaaatgatacatcattagatataatttctaatagattatatgatgtc |
31071589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 31071719 - 31071663
Alignment:
| Q |
5 |
tatcatacagttttggcataattttctga-agatgctaaatatccattttgtgacag |
60 |
Q |
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||||||||| ||||| |||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
31071719 |
tatcatacatatttggtataattttatgagagatgctgaatatccattttgtgacag |
31071663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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