View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_20 (Length: 270)
Name: NF19291_low_20
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 7278726 - 7278922
Alignment:
| Q |
50 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacca |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7278726 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcaccatcctcattcaccaaagcttcaattttattacca |
7278825 |
T |
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| Q |
150 |
ccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgg |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278826 |
ccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgg |
7278922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 7375113 - 7374917
Alignment:
| Q |
50 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacca |
149 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375113 |
tttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacca |
7375014 |
T |
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| Q |
150 |
ccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgg |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375013 |
ccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgg |
7374917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 7278700 - 7278783
Alignment:
| Q |
114 |
ccatcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattc |
197 |
Q |
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| T |
7278700 |
ccatcctcattcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattc |
7278783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 7278542 - 7278593
Alignment:
| Q |
49 |
atttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
100 |
Q |
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||||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
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| T |
7278542 |
atttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7278593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 7375139 - 7375056
Alignment:
| Q |
114 |
ccatcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattc |
197 |
Q |
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| T |
7375139 |
ccatcctcattcatcaaaggtcccattttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattc |
7375056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 7375297 - 7375246
Alignment:
| Q |
49 |
atttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
100 |
Q |
| |
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||||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
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| T |
7375297 |
atttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7375246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 7278520 - 7278576
Alignment:
| Q |
117 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
173 |
Q |
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||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
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| T |
7278520 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7278576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 7375319 - 7375263
Alignment:
| Q |
117 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
173 |
Q |
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||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
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| T |
7375319 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7375263 |
T |
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