View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_24 (Length: 255)
Name: NF19291_low_24
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_24 |
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| [»] scaffold0115 (3 HSPs) |
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| [»] scaffold0442 (1 HSPs) |
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| [»] scaffold0557 (2 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 43278 - 43135
Alignment:
| Q |
7 |
gtgagaagaaagaagacgaatatttagggttagtgacacgggcttgggcctaggtatgtttgaataaattggttgggcaagcccaaaccacacgccacat |
106 |
Q |
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| T |
43278 |
gtgacaagaaagaagacgaatatttagggttagtgacacgggcttgggcctaggtatgtgtgaataaattggttgggcaagcccaaaccacacgccacat |
43179 |
T |
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| Q |
107 |
ttgagttattcataaatacatataaacatacatattaaattata |
150 |
Q |
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| T |
43178 |
ttgagttattcataaatacatataaacatacatattaaattata |
43135 |
T |
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Target: scaffold0115; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 42849 - 42791
Alignment:
| Q |
142 |
taaattatatcattattgtagtttaacaagtgatctacttttttcaacaatttacttga |
200 |
Q |
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| T |
42849 |
taaattatatcattattgtagttcaacaagtgatctacttttttcaacaatttacttga |
42791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 42774 - 42739
Alignment:
| Q |
220 |
acaaatttacttgaaaattttaatatacaaaacaac |
255 |
Q |
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| T |
42774 |
acaaatttacttgaaaattttaatatacaaaacaac |
42739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 318 - 144
Alignment:
| Q |
12 |
aagaaagaagacgaatatttagggttagtgacacgggcttgggcctaggtatgtttgaataaattggttgggcaagcccaaaccacacgccacatttgag |
111 |
Q |
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| T |
318 |
aagaaacaagacgagtatttagggtttgagacacatgcttgggcctaggtatgtttgaagaaattggttaagaaagcccaaaccacaagccgcattcgac |
219 |
T |
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| Q |
112 |
ttattcataaatacatataaacatacatattaaattatatcattattgtagtttaacaagtgatctacttttttcaacaat |
192 |
Q |
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| T |
218 |
ttat------atataaataagcagacatattaaattatatcattgatctagttcaacaagtgaactaattttttcaacaat |
144 |
T |
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Target: scaffold0557 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 2675 - 2580
Alignment:
| Q |
12 |
aagaaagaagacgaatatttagggttagtgacacgggcttgggcctaggtatgtttgaataaattggttgggcaagcccaaaccacacgccacatt |
107 |
Q |
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| T |
2675 |
aagaaacaagacgagtatttagggttagagacacatgcttgggcctaggtatgtttgaagaaattggttaagaaagcccaaaccacaagccgcatt |
2580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 2444 - 2410
Alignment:
| Q |
220 |
acaaatttacttgaaaattttaatatacaaaacaa |
254 |
Q |
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| T |
2444 |
acaaatttacttgaaaattttaatattcaaaacaa |
2410 |
T |
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