View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_25 (Length: 254)
Name: NF19291_low_25
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4111306 - 4111070
Alignment:
| Q |
1 |
aataaagttttcttacttaatctgttcattgattgcagattcaacttcatcttgaaaattctgacgagccaaagaaacattatgagcaataggaacagca |
100 |
Q |
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| T |
4111306 |
aataaagttttcttacttaatctgttcattgattgcagattcaacttcatcttgaaaattctgacgagccaaagaaacattatgagcaataggaacagca |
4111207 |
T |
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| Q |
101 |
agaacatctttcttgacttcttcaaacggttcaaagataacaccagttaatgccgttggtgcatttgcagcagcagcatgaaccttcacgttcttcctct |
200 |
Q |
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| T |
4111206 |
agaacatctttcttgacttcttcaaacggttcaaagataacaccagttaatgccgttggtgcatttgcagcagcagcatgaaccttcacgttcttcctct |
4111107 |
T |
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| Q |
201 |
tatcaccatccataggaagattcaaagaagaaaaagt |
237 |
Q |
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| T |
4111106 |
tatcaccatccataggaagattcaaagaagaaaaagt |
4111070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 25794515 - 25794650
Alignment:
| Q |
12 |
cttacttaatctgttcattgattgcagattcaacttcatcttgaaaattctgacgagccaaagaaacattatgagcaataggaacagcaagaacatcttt |
111 |
Q |
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||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||| | | || ||||||||||||||||| |||||| |
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| T |
25794515 |
cttacttaatctgctcattgatcacagattcacattcatcagcaaaattctgacgagccaaagaaacttgaggaacaataggaacagcaagataatcttt |
25794614 |
T |
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| Q |
112 |
cttgacttcttcaaacggttcaaagataacaccagt |
147 |
Q |
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| T |
25794615 |
tttaacctcctcaaacggttcaaatataaccccagt |
25794650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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