View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_28 (Length: 250)
Name: NF19291_low_28
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 40310235 - 40309998
Alignment:
| Q |
13 |
aatatcattgaccttttgagttttatgatcggttgcttcaattttttcttgtacagaatcacgatttgatattagctttttcttttctctttctacatct |
112 |
Q |
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| T |
40310235 |
aatatcattgaccttttgagttttatgatcggttgcttcaattttttcttgtactgaatcatgatttgatattagctttttcttttctctttctacatct |
40310136 |
T |
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| Q |
113 |
ttaatgattttgtaagctcgatatacacatagtttattgattgtcttgtacagaataatcgatatgatacaaacaacagttatggttatcttgtatgtag |
212 |
Q |
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| T |
40310135 |
ttaatgattttgtaagctcgatatacacatagtttattgatcgtctttatcagaataatcgatatgatacaaacaacagttatggttatcttgtatgtag |
40310036 |
T |
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| Q |
213 |
caagtccaatggcaaggtaatctgaaaaataaccaatc |
250 |
Q |
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| T |
40310035 |
caagtccaatggcaaggtaatctgaaaaataaccaatc |
40309998 |
T |
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