View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19291_low_31 (Length: 240)

Name: NF19291_low_31
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19291_low_31
NF19291_low_31
[»] chr2 (5 HSPs)
chr2 (2-154)||(35442728-35442881)
chr2 (8-79)||(18491965-18492036)
chr2 (7-94)||(42139522-42139609)
chr2 (26-75)||(38357776-38357825)
chr2 (50-94)||(5946409-5946453)
[»] chr4 (5 HSPs)
chr4 (8-86)||(33890267-33890345)
chr4 (16-94)||(1162364-1162442)
chr4 (15-97)||(46881010-46881092)
chr4 (8-73)||(27381735-27381800)
chr4 (39-76)||(31404708-31404745)
[»] chr8 (4 HSPs)
chr8 (8-85)||(3346102-3346179)
chr8 (15-98)||(43408679-43408762)
chr8 (15-93)||(10861096-10861173)
chr8 (7-60)||(40210446-40210499)
[»] chr5 (3 HSPs)
chr5 (7-94)||(2942066-2942153)
chr5 (8-94)||(34640177-34640263)
chr5 (24-92)||(17902802-17902870)
[»] chr7 (6 HSPs)
chr7 (24-98)||(44235293-44235367)
chr7 (3-120)||(28175400-28175517)
chr7 (24-92)||(2525303-2525371)
chr7 (45-85)||(26769359-26769399)
chr7 (47-87)||(29234852-29234892)
chr7 (7-79)||(33981617-33981689)
[»] chr6 (3 HSPs)
chr6 (7-76)||(25142248-25142317)
chr6 (17-69)||(724711-724763)
chr6 (24-69)||(1729190-1729235)
[»] chr3 (2 HSPs)
chr3 (8-71)||(54402340-54402403)
chr3 (8-92)||(9198032-9198116)
[»] chr1 (2 HSPs)
chr1 (25-92)||(28870456-28870523)
chr1 (15-69)||(17812732-17812786)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 35442728 - 35442881
Alignment:
Q  2 ccattcttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatcaactacat 101  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |    
T  35442728 ccattcttttatatcattttaaatttataagctactcaaactattaattttatcaaacattacaaatttaatcaactaccttatctgctatcaaatactt 35442827  T
Q  102 actatcttataagttat-ccctataaatacatctactataagttaacttatcag 154  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  35442828 actatcttataagttatcccctataaatacatctactataaattaacttatcag 35442881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 18491965 - 18492036
Alignment:
Q  8 ttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaacta 79  Q
    |||||| |||||| | ||| ||||| || | |||||  |||||||||||||||||| |||||||||||||||    
T  18491965 ttttatgtcatttcatattaataagttagttcaactgctaattttatcaaacattataaatttaatcaacta 18492036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 42139522 - 42139609
Alignment:
Q  7 cttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatca 94  Q
    |||||||||||||| | |||||||||||| | |||||  |||||||| |||||| |||||||| ||  | |||  |||||||||||||    
T  42139522 cttttatatcatttcatatttataagctagttcaactgctaattttaccaaacactacaaattgaacaagctagattatccgctatca 42139609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 38357776 - 38357825
Alignment:
Q  26 ttataagctactccaactattaattttatcaaacattacaaatttaatca 75  Q
    |||||||||||| ||||||||||||||| |||| ||| |||||| |||||    
T  38357776 ttataagctacttcaactattaattttaacaaatattgcaaattcaatca 38357825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 5946409 - 5946453
Alignment:
Q  50 tttatcaaacattacaaatttaatcaactaccttatccgctatca 94  Q
    |||| ||||||||| ||||| ||||| ||||||||||||||||||    
T  5946409 tttaccaaacattataaattcaatcagctaccttatccgctatca 5946453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 33890267 - 33890345
Alignment:
Q  8 ttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatc 86  Q
    ||||||||| ||| | ||||||||| || | ||||  |||||||||||||||||||||||||||||| |||| ||||||    
T  33890267 ttttatatcctttcatatttataagatagttcaacagttaattttatcaaacattacaaatttaatcgactaacttatc 33890345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 1162364 - 1162442
Alignment:
Q  16 cattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatca 94  Q
    ||||||| | ||||||| || || ||| |||||||||| |||| |||||||||| ||||| |||  |||||||||||||    
T  1162364 cattttataattataagatagtctaacgattaattttaccaaatattacaaattcaatcagctagattatccgctatca 1162442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 46881010 - 46881092
Alignment:
Q  15 tcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatcaact 97  Q
    |||||||| ||||||||| || | || |  |||||||||| ||||| || ||||||||||||||| ||||| |||||| ||||    
T  46881010 tcattttatatttataagttagttcagccgttaattttattaaacactataaatttaatcaactagcttattcgctataaact 46881092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 27381800 - 27381735
Alignment:
Q  8 ttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaat 73  Q
    |||||| ||||||||  |||||||| || | ||||  ||||||||||||||||||| |||||||||    
T  27381800 ttttatgtcattttatgtttataagttagttcaaccgttaattttatcaaacattataaatttaat 27381735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 31404708 - 31404745
Alignment:
Q  39 caactattaattttatcaaacattacaaatttaatcaa 76  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  31404708 caactattaattttatcaaacattaccaattcaatcaa 31404745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 3346179 - 3346102
Alignment:
Q  8 ttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttat 85  Q
    ||||| ||||||| | ||||||||| || ||||||  |||||||||||| |||||||||||| ||||||||| |||||    
T  3346179 ttttagatcatttcatatttataagttattccaaccgttaattttatcatacattacaaattcaatcaactagcttat 3346102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 43408679 - 43408762
Alignment:
Q  15 tcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatcaacta 98  Q
    |||||| | |||||||||||| | ||| || |||||||| |||||| |||||||| ||||  ||| |||||||||||| |||||    
T  43408679 tcatttcatatttataagctagttcaattactaattttaccaaacactacaaattcaatcggctagcttatccgctataaacta 43408762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 10861096 - 10861173
Alignment:
Q  15 tcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatc 93  Q
    |||||| | |||||||||||| | ||  | || |||||||||||||||||||||| |||| |||| |||||||||||||    
T  10861096 tcatttcatatttataagctagttcagttgttgattttatcaaacattacaaattcaatc-actagcttatccgctatc 10861173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 40210446 - 40210499
Alignment:
Q  7 cttttatatcattttaaatttataagctactccaactattaattttatcaaaca 60  Q
    ||||||| |||||||| | |||| ||||||| |||| |||||||||||||||||    
T  40210446 cttttatgtcattttatacttatcagctacttcaacaattaattttatcaaaca 40210499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 2942066 - 2942153
Alignment:
Q  7 cttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatca 94  Q
    ||||||| |||||||| ||||||||| || | |||| | |||||||| |||||  |||||||| || |||||| ||||||||||||||    
T  2942066 cttttatgtcattttatatttataagttagttcaaccactaattttaccaaaccctacaaattcaaccaactagcttatccgctatca 2942153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 34640177 - 34640263
Alignment:
Q  8 ttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatca 94  Q
    |||||| |||||| | |||||||||||||   ||| | |||||||| ||||||||||||||| ||| | ||| ||||||||||||||    
T  34640177 ttttatgtcatttcatatttataagctacaataaccactaattttaccaaacattacaaattcaataagctagcttatccgctatca 34640263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 17902802 - 17902870
Alignment:
Q  24 atttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctat 92  Q
    |||||||||||| | |||||  || ||||| |||||| ||||||||||||||||||  |||||| ||||    
T  17902802 atttataagctagttcaactgctagttttaccaaacactacaaatttaatcaactagtttatcctctat 17902870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 44235367 - 44235293
Alignment:
Q  24 atttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatcaacta 98  Q
    |||||||||||||| ||||  |||| |||| |||||| |||||||| ||||| ||| |||||| |||||||||||    
T  44235367 atttataagctacttcaacggttaactttaccaaacactacaaattaaatcagctaacttatctgctatcaacta 44235293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 28175517 - 28175400
Alignment:
Q  3 cattcttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctatcaactacata 102  Q
    |||| |||||| |||||| | |||| ||||||||| ||||   ||||| ||||||||| |||||||| |  |||||| || ||||||||||| ||| |      
T  28175517 catttttttatgtcatttcatatttgtaagctacttcaaccgctaattatatcaaacactacaaattcagccaactagctgatccgctatcagctataag 28175418  T
Q  103 ctatcttataagttatcc 120  Q
    ||| ||||||||| ||||    
T  28175417 ctagcttataagtcatcc 28175400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 2525303 - 2525371
Alignment:
Q  24 atttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctat 92  Q
    |||||||||||| | || ||  |||||||| |||||| |||||||| ||||| ||| ||||||||||||    
T  2525303 atttataagctagttcagctgctaattttaccaaacaatacaaattcaatcagctagcttatccgctat 2525371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 26769359 - 26769399
Alignment:
Q  45 ttaattttatcaaacattacaaatttaatcaactaccttat 85  Q
    ||||||||||||||||||||||| | ||||||||| |||||    
T  26769359 ttaattttatcaaacattacaaaatcaatcaactaacttat 26769399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 29234852 - 29234892
Alignment:
Q  47 aattttatcaaacattacaaatttaatcaactaccttatcc 87  Q
    |||||||||||||| |||||||| ||||||||| |||||||    
T  29234852 aattttatcaaacactacaaattcaatcaactagcttatcc 29234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 33981689 - 33981617
Alignment:
Q  7 cttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaacta 79  Q
    ||||||| |||||||| |||||| ||| ||| ||||   ||||||||||||||||| ||| |||||| |||||    
T  33981689 cttttatgtcattttatatttatcagccacttcaacagctaattttatcaaacatttcaattttaataaacta 33981617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 25142317 - 25142248
Alignment:
Q  7 cttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaa 76  Q
    |||||||||||||| | ||||||||  || | |||| ||||||||||||||| |||||||||| ||||||    
T  25142317 cttttatatcatttcatatttataaaatagttcaaccattaattttatcaaatattacaaattcaatcaa 25142248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 724711 - 724763
Alignment:
Q  17 attttaaatttataagctactccaactattaattttatcaaacattacaaatt 69  Q
    |||||| |||||||||||||| |||| | ||||||||||||||| ||||||||    
T  724711 attttatatttataagctacttcaaccactaattttatcaaacactacaaatt 724763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 1729235 - 1729190
Alignment:
Q  24 atttataagctactccaactattaattttatcaaacattacaaatt 69  Q
    ||||||||| |||| |||||||||| ||||||||||| ||||||||    
T  1729235 atttataagttacttcaactattaactttatcaaacaatacaaatt 1729190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 54402340 - 54402403
Alignment:
Q  8 ttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaattta 71  Q
    ||||||||||||||| |||||||||||| |  || | |||||||||||||||| || |||||||    
T  54402340 ttttatatcattttatatttataagctaatttaaatgttaattttatcaaacactataaattta 54402403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 9198116 - 9198032
Alignment:
Q  8 ttttatatcattttaaatttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctat 92  Q
    |||||| |||||| | ||||| || ||| | |||| | |||||||| |||||| |||| ||| ||||||||| ||||||||||||    
T  9198116 ttttatgtcatttcatatttacaaactagttcaacaactaattttaccaaacactacagattcaatcaactaacttatccgctat 9198032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 28870523 - 28870456
Alignment:
Q  25 tttataagctactccaactattaattttatcaaacattacaaatttaatcaactaccttatccgctat 92  Q
    ||||||||||| | ||||| ||||||||| |||||| || ||||| ||| ||||| ||||||||||||    
T  28870523 tttataagctagttcaactgttaattttaccaaacactaaaaattcaataaactagcttatccgctat 28870456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 17812786 - 17812732
Alignment:
Q  15 tcattttaaatttataagctactccaactattaattttatcaaacattacaaatt 69  Q
    |||||| | ||||||||| |||| |||||||||||||||| |||||||| |||||    
T  17812786 tcatttcatatttataagttacttcaactattaattttattaaacattataaatt 17812732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University