View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19291_low_32 (Length: 239)

Name: NF19291_low_32
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19291_low_32
NF19291_low_32
[»] chr5 (1 HSPs)
chr5 (15-224)||(32562452-32562662)
[»] scaffold0047 (1 HSPs)
scaffold0047 (22-173)||(48691-48841)
[»] chr7 (2 HSPs)
chr7 (17-173)||(43502616-43502773)
chr7 (17-170)||(39069910-39070065)
[»] chr4 (2 HSPs)
chr4 (128-224)||(53690819-53690915)
chr4 (17-93)||(29317651-29317728)
[»] chr8 (1 HSPs)
chr8 (17-106)||(32210840-32210929)
[»] chr2 (5 HSPs)
chr2 (17-106)||(5966559-5966648)
chr2 (17-106)||(37780719-37780808)
chr2 (17-93)||(16424439-16424515)
chr2 (17-106)||(22986156-22986245)
chr2 (16-87)||(25866626-25866697)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 32562662 - 32562452
Alignment:
Q  15 taagagagtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgtagcagatctttttaataaaaa 114  Q
    |||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| | |||| |||||||||| ||    
T  32562662 taagagagtggtaaatagttttagaatatgaagaaagaaagagacggttcaaagattagtgaagcaaacaaatgattgtcgtagatttttttaataataa 32562563  T
Q  115 tcattgaattttcttttattgattcggcatcttcattaatacataaataagttccaaat-nnnnnnntaaggggctatgaaagatattatttaagtgtta 213  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||    
T  32562562 tcattaaattttcttttattgattcggcatcttcattaatacataaataagttccaaataaaaaaaataagggtctatgaaagatattatttaagtgtta 32562463  T
Q  214 aatgtattttc 224  Q
     ||||||||||    
T  32562462 tatgtattttc 32562452  T

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Target: scaffold0047 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 48841 - 48691
Alignment:
Q  22 gtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgtagcagatctttt-taataaaaatcattg 120  Q
    ||||||||||||||| |||||||||||||||||||   |||  |||||| ||||||| ||||||||| ||| |  |||| |||| |||||| ||||||||    
T  48841 gtggtaaatagttatggaatatgaagaaagaaaaaggtagtcgaaagataagtgaagaaaacaaatgtttg-attagattttttataataacaatcattg 48743  T
Q  121 aattttcttttattgattcggcatcttcattaatacataaataagttccaaat 173  Q
    || | | || |||||||||| || |||||||||||||||||||||||||||||    
T  48742 aaatat-ttgtattgattcgacagcttcattaatacataaataagttccaaat 48691  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 43502616 - 43502773
Alignment:
Q  17 agagagtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgtagcagatcttttta--ataaaaa 114  Q
    ||||| |||||||||| ||| ||||| ||||||||||||   ||||| |||||| | ||||| ||||||||| |||  | |||| ||||||  |||| ||    
T  43502616 agagaatggtaaatagatatggaatacgaagaaagaaaatggcagttgaaagatcaatgaagaaaacaaatgtttgacgtagatttttttataataacaa 43502715  T
Q  115 tcattgaattttcttttattgattcggcatcttcattaatacataaataagttccaaat 173  Q
    |||||||| | | |||||||||||||||| |||||||||||||||||| ||||||||||    
T  43502716 tcattgaaatat-ttttattgattcggcagcttcattaatacataaatgagttccaaat 43502773  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 39069910 - 39070065
Alignment:
Q  17 agagagtggtaaatagttatagaatatgaagaaa-gaaaaatacagttcaaagattagtgaagcaaacaaatgattgtagcagatcttttta--ataaaa 113  Q
    |||||||||||||||| ||| ||||||||||||| ||||||  ||||| |||||| | ||||| ||||||||| |||  | |||| ||||||  |||| |    
T  39069910 agagagtggtaaatagatatggaatatgaagaaaagaaaaaggcagttgaaagatcaatgaagaaaacaaatgtttgacgtagatttttttataataaca 39070009  T
Q  114 atcattgaattttcttttattgattcggcatcttcattaatacataaataagttcca 170  Q
    ||||||||| | | | |||||||||||||| |||||||||||||||||| |||||||    
T  39070010 atcattgaaatat-tattattgattcggcagcttcattaatacataaatgagttcca 39070065  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 53690819 - 53690915
Alignment:
Q  128 ttttattgattcggcatcttcattaatacataaataagttccaaatnnnnnnntaaggggctatgaaagatattatttaagtgttaaatgtattttc 224  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||       || ||| |||||||||||||||||||||||||| || |||||||    
T  53690819 ttttattgattcgacagcttcattaatacatgaataagttccaaataaaaaattaggggtctatgaaagatattatttaagtgttacatatattttc 53690915  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 29317728 - 29317651
Alignment:
Q  17 agagagtggtaaatagttatagaa-tatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgt 93  Q
    |||||||| ||||||||||| ||| ||||||||||||||||   |||| |||||||||| || |||||||||||||||    
T  29317728 agagagtgataaatagttatggaagtatgaagaaagaaaaaggtagttgaaagattagtaaaacaaacaaatgattgt 29317651  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 32210929 - 32210840
Alignment:
Q  17 agagagtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgtagcagatcttttt 106  Q
    ||||||||||||||| |||| ||||||||| |||||||||   |||| |||||||||||||||||  |||||||||| ||| || |||||    
T  32210929 agagagtggtaaataattattgaatatgaaaaaagaaaaaggtagttgaaagattagtgaagcaacaaaatgattgtcgcatattttttt 32210840  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 5966559 - 5966648
Alignment:
Q  17 agagagtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgtagcagatcttttt 106  Q
    ||||||||||||||| |||| ||||||||| |||||||||   |||| |||||||||||||||||  |||||||||| ||| || |||||    
T  5966559 agagagtggtaaataattattgaatatgaaaaaagaaaaaggtagttgaaagattagtgaagcaacaaaatgattgtcgcatattttttt 5966648  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 37780808 - 37780719
Alignment:
Q  17 agagagtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgtagcagatcttttt 106  Q
    ||||||||||||||| |||| ||||||||| |||||||||   |||| |||||||||||||||||  |||||||||| ||| || |||||    
T  37780808 agagagtggtaaataattattgaatatgaaaaaagaaaaaggtagttgaaagattagtgaagcaacaaaatgattgtcgcatattttttt 37780719  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 16424439 - 16424515
Alignment:
Q  17 agagagtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgt 93  Q
    |||||||| ||||||||||| |||||||||||||||||||   |||| ||| |||| |||| |||||||||||||||    
T  16424439 agagagtgataaatagttatggaatatgaagaaagaaaaaggtagttaaaaaattaatgaaacaaacaaatgattgt 16424515  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 22986156 - 22986245
Alignment:
Q  17 agagagtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaatgattgtagcagatcttttt 106  Q
    ||||||||||||||| |||| ||||||||| |||||||||   |||| ||||||||||||||||   |||||||||| ||| || |||||    
T  22986156 agagagtggtaaataattattgaatatgaaaaaagaaaaaggtagttgaaagattagtgaagcagcaaaatgattgtcgcatattttttt 22986245  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 25866626 - 25866697
Alignment:
Q  16 aagagagtggtaaatagttatagaatatgaagaaagaaaaatacagttcaaagattagtgaagcaaacaaat 87  Q
    |||| |||||||||||||||   |||||||| |||| |||| | |||| |||||||||||||||||||||||    
T  25866626 aagaaagtggtaaatagttaggaaatatgaaaaaaggaaaaaatagttgaaagattagtgaagcaaacaaat 25866697  T

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