View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_35 (Length: 230)
Name: NF19291_low_35
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 24 - 216
Target Start/End: Complemental strand, 40309809 - 40309617
Alignment:
| Q |
24 |
accaaggctacctctgaaatgggtaactcaaaaaatcaaattcatgttcttttttgtaaaagagagtcatgttgtcaactcgcccaatactatgttagtt |
123 |
Q |
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| T |
40309809 |
accaaggctacctctgaaatgggtaactcaaaaaatcaaactcatgttcttttttgtaaaagagagtcatgttgtcaactctcccaatactatgttagtt |
40309710 |
T |
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| Q |
124 |
ttataaatggatttatataaactcgtatcctccatttatatttataatgttggatctatagaggtatgagtttgatagaataggttacaactt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40309709 |
ttataaatggatttatataaactcgtatcctccatttatatttataatgttggatctatagaggtatgagtttgataaaataggttacaactt |
40309617 |
T |
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