View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19291_low_36 (Length: 216)

Name: NF19291_low_36
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19291_low_36
NF19291_low_36
[»] chr8 (3 HSPs)
chr8 (1-216)||(40545829-40546053)
chr8 (132-194)||(16722357-16722419)
chr8 (53-119)||(16722269-16722335)
[»] scaffold0079 (1 HSPs)
scaffold0079 (14-193)||(16336-16524)
[»] chr4 (2 HSPs)
chr4 (1-104)||(17503851-17503954)
chr4 (14-117)||(17278905-17279008)
[»] chr1 (2 HSPs)
chr1 (31-211)||(49331118-49331307)
chr1 (31-119)||(16887093-16887181)
[»] chr6 (4 HSPs)
chr6 (48-112)||(22724885-22724949)
chr6 (138-193)||(13255964-13256018)
chr6 (137-194)||(22337748-22337804)
chr6 (132-184)||(22724977-22725029)
[»] chr7 (3 HSPs)
chr7 (14-119)||(21935561-21935666)
chr7 (7-119)||(16177778-16177888)
chr7 (132-194)||(21585402-21585464)
[»] chr3 (2 HSPs)
chr3 (137-211)||(14753087-14753161)
chr3 (49-119)||(21486841-21486911)
[»] chr2 (3 HSPs)
chr2 (48-193)||(29801309-29801463)
chr2 (1-105)||(29799210-29799315)
chr2 (15-119)||(18830449-18830553)
[»] scaffold0013 (1 HSPs)
scaffold0013 (14-88)||(6338-6412)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 40545829 - 40546053
Alignment:
Q  1 actattttacattacctaatctcgattactttaattgagattcttttaattcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattca 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40545829 actattttacattacctaatctcgattacttcaattgagattcttttaattcaattatctcacaatcgaagttgaaagtaagctttaaacaattgattca 40545928  T
Q  101 tataccgtgtgtccattagctgtcaatgt---------taaataggtttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaa 191  Q
    |||||||||||||||||||||||||||||         | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40545929 tataccgtgtgtccattagctgtcaatgtgatttattgttaataggtttggtttgagataattttgttttatcatttgaatgtgtgtattgattcttgaa 40546028  T
Q  192 ttgaatcctaaaattcaatattaaa 216  Q
    ||| |||||||||||||||||||||    
T  40546029 ttgtatcctaaaattcaatattaaa 40546053  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 16722357 - 16722419
Alignment:
Q  132 aataggtttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaattg 194  Q
    |||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||    
T  16722357 aataggtttgatttgagatactttagttttgtgatttgaatgtgtgtattgattgttgaattg 16722419  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 16722269 - 16722335
Alignment:
Q  53 aattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgtccattag 119  Q
    |||| ||||| |||||||||||||||| | ||| ||||||||  |||||||||| ||||| ||||||    
T  16722269 aattttctcaaaatcaaagttgaaagttaacttcaaacaattacttcatataccttgtgttcattag 16722335  T

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Target: scaffold0079 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 16524 - 16336
Alignment:
Q  14 acctaatctcgattactttaattgagattcttttaattcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgtc 113  Q
    |||||||||| ||||||| |||||||||||||  || ||||||||||||||||||||||| ||| ||||||| || || |||||||||||||| | |||     
T  16524 acctaatctcaattacttcaattgagattcttacaaatcaattatctcacaatcaaagttaaaaataagcttcaagcagttgattcatataccttttgtt 16425  T
Q  114 cattagctgtcaatgt---------taaataggtttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaatt 193  Q
    |||||| ||| | |||         | | ||||||| |||||||||| ||| ||||||  ||||| ||||||||||||||| |||||||    
T  16424 cattagttgttagtgtgatttgttgttactaggtttagtttgagatagtttagttttgcaatttgtatgtgtgtattgattgttgaatt 16336  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17503954 - 17503851
Alignment:
Q  1 actattttacattacctaatctcgattactttaattgagattcttttaattcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattca 100  Q
    ||||||||||||||||||||||| | ||| | || ||||||||||| |||||| || ||||| ||||||||||||||||||| || ||||| ||||||||    
T  17503954 actattttacattacctaatctcaaatacatcaagtgagattctttcaattcagttctctcataatcaaagttgaaagtaaggttcaaacatttgattca 17503855  T
Q  101 tata 104  Q
    ||||    
T  17503854 tata 17503851  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 17278905 - 17279008
Alignment:
Q  14 acctaatctcgattactttaattgagattcttttaa-ttcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgt 112  Q
    |||||||||| ||||||| | |||||||| ||| || |||| ||   |||||||||| ||||||||||||||| ||  || ||||||||||||| |||||    
T  17278905 acctaatctcaattacttcagttgagattttttcaaattcagtttcatcacaatcaa-gttgaaagtaagcttcaaggaaatgattcatataccatgtgt 17279003  T
Q  113 ccatt 117  Q
     ||||    
T  17279004 tcatt 17279008  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 49331307 - 49331118
Alignment:
Q  31 ttaattgagattcttttaattcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgtccattagctgtcaatg-- 128  Q
    |||||||||||| |   ||||||||| |||| ||||||||||||||| | | ||| ||||||||  ||||||||||  ||||  ||||||||| | ||      
T  49331307 ttaattgagattttaccaattcaattttctcccaatcaaagttgaaaattaacttcaaacaattacttcatataccccgtgtttattagctgttagtggg 49331208  T
Q  129 -----tta--aataggtttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaattgaatcctaaaattcaata 211  Q
         |||  ||||||||||||||| |||| ||| ||||||| ||||| ||||||||||||||| |||||||| ||  ||||||||||||    
T  49331207 atttgttattaataggtttggtttgtgatagtttagttttgtgatttgtatgtgtgtattgattgttgaattgtataataaaattcaata 49331118  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 16887093 - 16887181
Alignment:
Q  31 ttaattgagattcttttaattcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgtccattag 119  Q
    |||||||||||| | | |||| |||| |||| |||| |||||||||||| | ||| ||| || ||||||||||||| ||||| ||||||    
T  16887093 ttaattgagattttctcaatttaattttctcgcaatgaaagttgaaagttaacttcaaataaatgattcatataccttgtgttcattag 16887181  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 22724885 - 22724949
Alignment:
Q  48 aattcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgt 112  Q
    ||||||||| |||||||||||||||||||||| | ||| ||||||||| |||||||||| |||||    
T  22724885 aattcaattttctcacaatcaaagttgaaagttaacttcaaacaattgcttcatataccttgtgt 22724949  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 13256018 - 13255964
Alignment:
Q  138 tttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaatt 193  Q
    |||||||||||||| ||| ||||||| |||||||| |||||||||||| |||||||    
T  13256018 tttggtttgagatagtttagttttgtgatttgaat-tgtgtattgattgttgaatt 13255964  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 22337748 - 22337804
Alignment:
Q  137 gtttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaattg 194  Q
    ||||||||||||||  ||| ||||||| |||||||| |||||||||||| ||||||||    
T  22337748 gtttggtttgagattgtttagttttgtaatttgaat-tgtgtattgattattgaattg 22337804  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 22724977 - 22725029
Alignment:
Q  132 aataggtttggtttgagataattttgttttgtcatttgaatgtgtgtattgat 184  Q
    ||||| |||||||||||||| ||| ||||||  |||||||||||| |||||||    
T  22724977 aatagttttggtttgagatagtttagttttgcaatttgaatgtgtatattgat 22725029  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 21935666 - 21935561
Alignment:
Q  14 acctaatctcgattactttaattgagattcttt-taattcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgt 112  Q
    |||||||||| ||||||| ||||||||||||||  ||||||||| | | ||||||||| ||  || |||| || |||| ||||||||||||||| |||||    
T  21935666 acctaatctcaattacttcaattgagattctttcaaattcaattttattacaatcaaaatt-caattaagtttcaaaccattgattcatataccatgtgt 21935568  T
Q  113 ccattag 119  Q
     ||||||    
T  21935567 tcattag 21935561  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 16177778 - 16177888
Alignment:
Q  7 ttacattacctaatctcgattactttaattgagattcttttaattcaattatctcacaatcaaagttgaaagtaagctttaaacaa-ttgattcatatac 105  Q
    |||||| || ||||||| ||||||| |||| ||||||| | |||| ||||  |||| |||||| ||||||| ||||||| |||||| ||||||||||| |    
T  16177778 ttacatcacttaatctcaattacttcaatttagattctctcaatttaatt--ctcataatcaa-gttgaaactaagcttcaaacaaattgattcatatgc 16177874  T
Q  106 cgtgtgtccattag 119  Q
    | ||||| ||||||    
T  16177875 cttgtgttcattag 16177888  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 21585464 - 21585402
Alignment:
Q  132 aataggtttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaattg 194  Q
    |||||||||||||| ||||| ||| ||||||| | ||||| || |||||||||| ||||||||    
T  21585464 aataggtttggttttagatagtttagttttgtgacttgaacgtatgtattgattgttgaattg 21585402  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 14753161 - 14753087
Alignment:
Q  137 gtttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaattgaatcctaaaattcaata 211  Q
    ||||||||||||||  ||| ||||||| |||||||||||||||||| || |||||||| ||  ||| ||||||||    
T  14753161 gtttggtttgagattgtttagttttgtgatttgaatgtgtgtattgtttgttgaattgtattataagattcaata 14753087  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 21486911 - 21486841
Alignment:
Q  49 attcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgtccattag 119  Q
    |||||||| |||||||||||||||| ||||| | ||| ||||||||  |||||||||| ||||| ||||||    
T  21486911 attcaattttctcacaatcaaagttaaaagttaacttcaaacaattacttcatataccttgtgttcattag 21486841  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 29801309 - 29801463
Alignment:
Q  48 aattcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgtccattagctgtcaatgtta---------aataggt 138  Q
    ||||||||| |||||||||||||| | || |||| ||| |||||| |  |||||||||| ||||| |||||| ||| | ||| |         |||||||    
T  29801309 aattcaattttctcacaatcaaagctaaacgtaaacttcaaacaacttcttcatataccttgtgttcattagttgttagtgtgatttattcttaataggt 29801408  T
Q  139 ttggtttgagataattttgttttgtcatttgaatgtgtgtattgattcttgaatt 193  Q
    ||||||||||||| |||  |||||  ||||||||||||||| ||||| |||||||    
T  29801409 ttggtttgagatagtttaattttgcaatttgaatgtgtgtaatgattgttgaatt 29801463  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 29799210 - 29799315
Alignment:
Q  1 actattttacattacctaatctcgattactttaattgagattcttttaattcaattatctcacaatcaaagttgaaagtaagctttaaac-aattgattc 99  Q
    |||||||||||  ||||||  || ||| | | |||||||||| | | ||||||||| | |||||||||||||||||||||| ||| |||| ||||| |||    
T  29799210 actattttacaaaacctaacatcaatttcatcaattgagattttctcaattcaattttatcacaatcaaagttgaaagtaaacttcaaacaaattgcttc 29799309  T
Q  100 atatac 105  Q
    ||||||    
T  29799310 atatac 29799315  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 18830553 - 18830449
Alignment:
Q  15 cctaatctcgattactttaattgagattcttttaa-ttcaattatctcacaatcaaagttgaaagtaagctttaaacaattgattcatataccgtgtgtc 113  Q
    ||||||||| ||||||| | |||||||||||| || ||||||| | |||||||||| ||| ||  ||||  | |||| ||||||||||||||| |||||     
T  18830553 cctaatctcaattacttcagttgagattctttcaaattcaattttatcacaatcaaggttcaat-taagtctcaaaccattgattcatataccttgtgtt 18830455  T
Q  114 cattag 119  Q
    ||||||    
T  18830454 cattag 18830449  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 6412 - 6338
Alignment:
Q  14 acctaatctcgattactttaattgagattcttt-taattcaattatctcacaatcaaagttgaaagtaagctttaa 88  Q
    |||||||||| ||||||| ||||||||||||||  |||| ||||  ||||||||| ||||||||| ||||||||||    
T  6412 acctaatctcaattacttcaattgagattctttcaaatttaatttcctcacaatc-aagttgaaaataagctttaa 6338  T

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