View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19291_low_37 (Length: 203)

Name: NF19291_low_37
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19291_low_37
NF19291_low_37
[»] chr4 (7 HSPs)
chr4 (131-189)||(47178523-47178581)
chr4 (60-116)||(47177912-47177968)
chr4 (60-106)||(38677694-38677740)
chr4 (60-115)||(28796620-28796675)
chr4 (60-107)||(37576543-37576590)
chr4 (59-115)||(33164528-33164584)
chr4 (60-116)||(54208180-54208236)
[»] chr7 (10 HSPs)
chr7 (60-117)||(26009369-26009426)
chr7 (60-116)||(28138759-28138815)
chr7 (59-117)||(41957587-41957645)
chr7 (60-116)||(26011975-26012031)
chr7 (59-107)||(23345077-23345125)
chr7 (60-109)||(8525540-8525589)
chr7 (59-116)||(19931487-19931544)
chr7 (63-115)||(5195-5247)
chr7 (141-189)||(33838884-33838932)
chr7 (59-107)||(36325618-36325666)
[»] chr3 (12 HSPs)
chr3 (59-112)||(40517549-40517602)
chr3 (60-115)||(50663875-50663930)
chr3 (61-107)||(7546078-7546124)
chr3 (60-107)||(33148825-33148872)
chr3 (60-115)||(53814584-53814639)
chr3 (60-109)||(15040681-15040730)
chr3 (60-105)||(15042039-15042084)
chr3 (63-107)||(3540264-3540308)
chr3 (59-115)||(6162705-6162761)
chr3 (60-116)||(8150169-8150225)
chr3 (61-105)||(13843626-13843670)
chr3 (60-116)||(54528978-54529034)
[»] chr6 (8 HSPs)
chr6 (60-116)||(14153354-14153410)
chr6 (60-107)||(2559650-2559697)
chr6 (60-115)||(17436564-17436619)
chr6 (59-116)||(7203973-7204030)
chr6 (59-115)||(31522558-31522614)
chr6 (59-115)||(35060918-35060974)
chr6 (60-116)||(806545-806601)
chr6 (63-107)||(7203436-7203480)
[»] chr5 (11 HSPs)
chr5 (60-117)||(25760534-25760591)
chr5 (59-115)||(1145899-1145955)
chr5 (60-116)||(11135741-11135797)
chr5 (60-115)||(1145141-1145196)
chr5 (60-115)||(7164177-7164232)
chr5 (60-115)||(22252276-22252331)
chr5 (59-115)||(40266611-40266668)
chr5 (59-107)||(3758921-3758969)
chr5 (60-116)||(3759606-3759662)
chr5 (59-115)||(25759839-25759895)
chr5 (59-115)||(25787864-25787920)
[»] chr2 (11 HSPs)
chr2 (60-116)||(19984725-19984781)
chr2 (63-107)||(17797043-17797087)
chr2 (59-115)||(18394993-18395049)
chr2 (60-116)||(22788007-22788063)
chr2 (60-115)||(2154262-2154317)
chr2 (60-115)||(8273245-8273300)
chr2 (59-105)||(11573632-11573678)
chr2 (58-115)||(25389873-25389930)
chr2 (59-107)||(5037298-5037346)
chr2 (63-107)||(9539109-9539153)
chr2 (59-115)||(37893031-37893087)
[»] chr1 (4 HSPs)
chr1 (59-115)||(5602943-5602999)
chr1 (63-107)||(9862923-9862967)
chr1 (60-116)||(5119053-5119109)
chr1 (59-115)||(39650195-39650251)
[»] chr8 (5 HSPs)
chr8 (59-111)||(9418586-9418638)
chr8 (60-115)||(3588568-3588623)
chr8 (60-116)||(1349241-1349297)
chr8 (60-108)||(5967267-5967315)
chr8 (60-116)||(24899088-24899144)
[»] scaffold0163 (1 HSPs)
scaffold0163 (60-115)||(35776-35831)
[»] scaffold1763 (1 HSPs)
scaffold1763 (60-105)||(397-442)
[»] scaffold0037 (1 HSPs)
scaffold0037 (63-104)||(38332-38373)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 47178581 - 47178523
Alignment:
Q  131 tcatgtaaagtgagttaactcacgttgatttttcactatcattttccttctattcttct 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47178581 tcatgtaaagtgagttaactcacgttgatttttcactatcattttccttctattcttct 47178523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 47177912 - 47177968
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||    
T  47177912 gaattctgctcttgacccaaacggtttcgctcgttcccaaagtaaattaccaaaata 47177968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 38677740 - 38677694
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaat 106  Q
    ||||||||||||||||||||||||||| | || ||||||||||||||    
T  38677740 gaattctgctctttacccaaacgattttgttcattcccaaagtaaat 38677694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 28796620 - 28796675
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||| |||||||||| || |||||| ||| ||||||||||| |||||||    
T  28796620 gaattctgctcattacccaaacaatatcgctcattctcaaagtaaatgtccaaaat 28796675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 37576543 - 37576590
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    ||||||||||| ||||||||||| ||| ||||||| ||||||||||||    
T  37576543 gaattctgctcattacccaaacggttttgctcgtttccaaagtaaatg 37576590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 33164584 - 33164528
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||| ||||||||| | || ||||| ||| ||||||||||| |||||||    
T  33164584 tgaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaat 33164528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 54208180 - 54208236
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||| ||||||||| ||||| | ||| |||| |||||||||||||||| |||||||    
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaata 54208236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 26009369 - 26009426
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaatat 117  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatat 26009426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 28138759 - 28138815
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaata 28138815  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 41957645 - 41957587
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaatat 117  Q
    |||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  41957645 tgaattttgctctttacccaaacgattttgatcattcccaaagtaaatgaccaaaatat 41957587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 26012031 - 26011975
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    |||||||||||||||||||||||||||   || ||| ||||||||||||||||||||    
T  26012031 gaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaata 26011975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 23345125 - 23345077
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    |||||| ||||||||||||||||||||| |||| |||||||| ||||||    
T  23345125 tgaattatgctctttacccaaacgattttgctcattcccaaaataaatg 23345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 8525589 - 8525540
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgac 109  Q
    ||||||||||||||||||||| | | |||||| || ||||||||||||||    
T  8525589 gaattctgctctttacccaaaggttatcgctcatttccaaagtaaatgac 8525540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 19931487 - 19931544
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    |||||||||||||||| | ||| | ||| |||||||| ||||||||||||| ||||||    
T  19931487 tgaattctgctctttatctaaatggttttgctcgttctcaaagtaaatgactaaaata 19931544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 5247 - 5195
Alignment:
Q  63 ttctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||| ||||||||| |  ||||||| |||||||||||||||||| ||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaat 5195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 33838884 - 33838932
Alignment:
Q  141 tgagttaactcacgttgatttttcactatcattttccttctattcttct 189  Q
    ||||||||||||||||| |||||||||| |||| | ||||| |||||||    
T  33838884 tgagttaactcacgttgctttttcactaccattcttcttctcttcttct 33838932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 36325618 - 36325666
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    ||||||||||||||||| |||||  ||| |||||||| |||||||||||    
T  36325618 tgaattctgctctttactcaaacagttttgctcgttctcaaagtaaatg 36325666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 40517602 - 40517549
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaa 112  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  40517602 tgaattctgctctttacccaaacggtttcgctcattcctaaagtaaatgaccaa 40517549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 50663875 - 50663930
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||    
T  50663875 gaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaat 50663930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 7546078 - 7546124
Alignment:
Q  61 aattctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  7546078 aattctgctctttacccaaactgtttcgctcgttcccaaagtaaatg 7546124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 33148825 - 33148872
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  33148825 gaattctgctcattacccaaacgtttttgctcgttcccaaagtaaatg 33148872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 53814639 - 53814584
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||| ||||||||| |  ||||||| |||||||||||||||| ||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaat 53814584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 15040681 - 15040730
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgac 109  Q
    ||||||||||| ||||||||| |  ||||||| |||||||||||||||||    
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgac 15040730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 15042084 - 15042039
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaa 105  Q
    ||||||||||| |||||||||| || |||||| |||||||||||||    
T  15042084 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaa 15042039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 3540308 - 3540264
Alignment:
Q  63 ttctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    |||||||||||||| ||||  ||| ||||||||||||||||||||    
T  3540308 ttctgctctttaccaaaactgttttgctcgttcccaaagtaaatg 3540264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 6162761 - 6162705
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||| ||||||||| | || ||||| ||||||||||||| | |||||||    
T  6162761 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaat 6162705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 8150169 - 8150225
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||| || |||||||||||||| ||| |||| ||||||||| || |||||||||||    
T  8150169 gaattatgatctttacccaaacgtttttgctcattcccaaagaaactgaccaaaata 8150225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
Q  61 aattctgctctttacccaaacgatttcgctcgttcccaaagtaaa 105  Q
    |||||||||| ||||||||| | |||||||| |||||||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 54529034 - 54528978
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||||||| ||| ||||| |||| ||| ||| ||||||| ||||||||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaata 54528978  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 14153354 - 14153410
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaata 14153410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 2559697 - 2559650
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  2559697 gaattttgctctttacccaaacgattttgctcgttcccaaagtaaatg 2559650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 17436619 - 17436564
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||| ||||||||| |  |||||||||||||||||||||||||| ||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaat 17436564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 7204030 - 7203973
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||| |||  ||||| ||||| ||||||||||||||||||||| |||||||    
T  7204030 tgaattctgctatttttccaaatgattttgctcgttcccaaagtaaatgatcaaaata 7203973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 31522614 - 31522558
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||| ||||||||| | || ||||| |||||||||||||||||| ||||    
T  31522614 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaat 31522558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 35060974 - 35060918
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||| ||||||||| |||| ||||| || |||||||||||| |||||||    
T  35060974 tgaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaat 35060918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 806545 - 806601
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||||||||||||  ||| |||| ||| ||||||||||| | ||||||    
T  806545 gaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaata 806601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 7203436 - 7203480
Alignment:
Q  63 ttctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    |||||||||||||| ||||  ||| ||||||||||||||||||||    
T  7203436 ttctgctctttaccaaaactgttttgctcgttcccaaagtaaatg 7203480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 25760591 - 25760534
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaatat 117  Q
    ||||||||||||||||||||||| ||  ||||||||| ||||||||||| ||||||||    
T  25760591 gaattctgctctttacccaaacggttatgctcgttccaaaagtaaatgatcaaaatat 25760534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 1145955 - 1145899
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||| | |||||||||| ||||||||| |||||||||||||||| ||||||    
T  1145955 tgaattctgcacattacccaaacaatttcgctcattcccaaagtaaatgatcaaaat 1145899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 11135741 - 11135797
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||| ||||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaata 11135797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 1145141 - 1145196
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||| ||||| ||| ||||||  |||||||| |||||||||||||||||||||||    
T  1145141 gaattatgctcattatccaaacagtttcgctcattcccaaagtaaatgaccaaaat 1145196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 7164177 - 7164232
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||||||||| ||||| ||  |||| |||| ||||||||||||||||||    
T  7164177 gaattctgctctttacctaaacgtttctgctcattcctaaagtaaatgaccaaaat 7164232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 22252331 - 22252276
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||| |||||||| |||||| |  || ||||||||||||||||||||||||||||    
T  22252331 gaattatgctctttgcccaaatggatttgctcgttcccaaagtaaatgaccaaaat 22252276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 40266668 - 40266611
Alignment:
Q  59 tgaattctgctcttt-acccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||||||| ||||||| |  || |||| |||||||||||||||||||||||    
T  40266668 tgaattctgctcttttacccaaatggatttgctcattcccaaagtaaatgaccaaaat 40266611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 3758921 - 3758969
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    |||||||||||||||||| ||||| |||  ||| |||||||||||||||    
T  3758921 tgaattctgctctttaccaaaacggttttactcattcccaaagtaaatg 3758969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 3759662 - 3759606
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||||  || |||| |||||||| || ||||| |||||||||||||||    
T  3759662 gaattctgctcttttacccaacggtttcgctcatttccaaaataaatgaccaaaata 3759606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 25759839 - 25759895
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||||||| |||||||  |  |||| |||| ||||||||||||||||||    
T  25759839 tgaattctgctctttatccaaacggatctgctcattcctaaagtaaatgaccaaaat 25759895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 25787920 - 25787864
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||||||| ||||||| ||  |||| || ||||| ||||||||||||||    
T  25787920 tgaattctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaat 25787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 19984781 - 19984725
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||||||||||||| ||  ||||||| | |||||||||||||||||||    
T  19984781 gaattctgctctttacccaaacggttatgctcgtttctaaagtaaatgaccaaaata 19984725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 17797087 - 17797043
Alignment:
Q  63 ttctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||    
T  17797087 ttctgctctttacccaaacaattttgcttgttcccaaagtaaatg 17797043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 18395049 - 18394993
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||| |||||||||| || |||||| |||||||||||| || |||||||    
T  18395049 tgaattctgctcattacccaaacaatatcgctcattcccaaagtaattgtccaaaat 18394993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 22788063 - 22788007
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||||||||||| |  || | || ||||||||||||||||||||||||    
T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaata 22788007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 2154262 - 2154317
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||| |||||||||| || |||||| ||||||||||||| || ||||||    
T  2154262 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagatcaaaat 2154317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 8273245 - 8273300
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||| ||||||||| |  ||||||| |||||||||||||||||| ||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaat 8273300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11573632 - 11573678
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaa 105  Q
    |||||||||||| |||||||||| || |||||| |||||||||||||    
T  11573632 tgaattctgctcattacccaaacaatatcgctcattcccaaagtaaa 11573678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 25389930 - 25389873
Alignment:
Q  58 ctgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||||||||| |||| |  || |||| ||| |||||||||||||||||||    
T  25389930 ctgaattctgctctttactcaaatggatttgctcattctcaaagtaaatgaccaaaat 25389873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 5037298 - 5037346
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    |||||||||||||||||| ||||| ||| | ||||| ||||||||||||    
T  5037298 tgaattctgctctttaccaaaacggttttgttcgtttccaaagtaaatg 5037346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 9539153 - 9539109
Alignment:
Q  63 ttctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    |||||||||||||| |||| |||| |||| |||||||||||||||    
T  9539153 ttctgctctttaccaaaactattttgctcattcccaaagtaaatg 9539109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 37893087 - 37893031
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||  ||||||||| | |||||||| ||||||||||||| | |||||||    
T  37893087 tgaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaat 37893031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 5602943 - 5602999
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||||||||||||| |  || |||| |||||||||||||||||||||||    
T  5602943 tgaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaat 5602999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 9862967 - 9862923
Alignment:
Q  63 ttctgctctttacccaaacgatttcgctcgttcccaaagtaaatg 107  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||    
T  9862967 ttctgctctttacccaaatgatttcgctcattcccaaaataaatg 9862923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 5119109 - 5119053
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||||| ||||||| ||| |||| |||| |||||||||| | ||||||    
T  5119109 gaattctgctctttatccaaacggttttgctcattcctaaagtaaatgtctaaaata 5119053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 39650195 - 39650251
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    |||||||||||| ||||| ||| | |||||||| |||| |||||||||| |||||||    
T  39650195 tgaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaat 39650251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 9418586 - 9418638
Alignment:
Q  59 tgaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgacca 111  Q
    |||||||||||| ||||||||| | |||||||| ||||||||||||| |||||    
T  9418586 tgaattctgctcattacccaaatggtttcgctcattcccaaagtaaaagacca 9418638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 3588623 - 3588568
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||| ||||||||||||| || || |||| |||||||| ||||||||||||||    
T  3588623 gaattctactctttacccaaatgaatttgctcattcccaaattaaatgaccaaaat 3588568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 1349297 - 1349241
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||||||||||||||||| | ||| |||| ||||| ||  ||||||||||||||    
T  1349297 gaattctgctctttacccaaaagtttttgctcattcccgaatgaaatgaccaaaata 1349241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 5967315 - 5967267
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatga 108  Q
    ||||||||||| ||||||||| |  ||||||| ||||||||||||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatga 5967267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 24899144 - 24899088
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaata 116  Q
    ||||||| ||||||||||||||  ||| | || |||||| |||||||||||||||||    
T  24899144 gaattctactctttacccaaacacttttgttcattcccagagtaaatgaccaaaata 24899088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 35776 - 35831
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaatgaccaaaat 115  Q
    ||||||||||||||| |||||| |||| |||| ||| ||||||||||| |||||||    
T  35776 gaattctgctctttaaccaaacaattttgctcattctcaaagtaaatgtccaaaat 35831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 442 - 397
Alignment:
Q  60 gaattctgctctttacccaaacgatttcgctcgttcccaaagtaaa 105  Q
    ||||| ||||||||||||||| | |||||||| |||||||||||||    
T  442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaa 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 38373 - 38332
Alignment:
Q  63 ttctgctctttacccaaacgatttcgctcgttcccaaagtaa 104  Q
    |||||||||||||||||||  |||||||| ||||||||||||    
T  38373 ttctgctctttacccaaactgtttcgctcattcccaaagtaa 38332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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