View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_4 (Length: 633)
Name: NF19291_low_4
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 327 - 616
Target Start/End: Complemental strand, 23783705 - 23783418
Alignment:
| Q |
327 |
atttgtatgttaaagtttgtattctataatttccnnnnnnnnnnaataacacaaatgttgatcgttaattaagaattatgaacttgttatgtgacacaaa |
426 |
Q |
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| T |
23783705 |
atttgtatgttaaagtttgtattctataatttcctttttttt--aataacacaaatgttgatcgttaattaaaaattatgaacttgttatgtcacacaaa |
23783608 |
T |
|
| Q |
427 |
aatcttcttactcatatatacaacaatatgtacagaaccttatgtatatgatattttaatctgaaaacttgttttattgttttagaattaaagaaagggt |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23783607 |
aatcttcttactcatatatacaacaatatgtacagaaccttatgtatatgatattttaatctgaaaacttgttttattgttttagaattaaagaaaaggt |
23783508 |
T |
|
| Q |
527 |
aaaaggttttttcattgggatttccttgagaaattcatcagaatctgggtttaacaaggaagtgattggagatttttcatgtatgatact |
616 |
Q |
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| T |
23783507 |
aaaaggttttttcattgggatttccttgagaaattcatcagaatctgggtttaacacggaagtgattggagatttttcatgtatgatact |
23783418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 327 - 616
Target Start/End: Complemental strand, 23870658 - 23870371
Alignment:
| Q |
327 |
atttgtatgttaaagtttgtattctataatttccnnnnnnnnnnaataacacaaatgttgatcgttaattaagaattatgaacttgttatgtgacacaaa |
426 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
23870658 |
atttgtatgttaaagtttgtattctataatttcctttttttt--aataacacaaatgttgatcgttaattaaaaattatgaacttgttatgtcacacaaa |
23870561 |
T |
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| Q |
427 |
aatcttcttactcatatatacaacaatatgtacagaaccttatgtatatgatattttaatctgaaaacttgttttattgttttagaattaaagaaagggt |
526 |
Q |
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| T |
23870560 |
aatcttcttactcatatatacaacaatatgtacagaaccttatgtatatgatattttaatctgaaaacttgttttattgttttagaattaaagaaaaggt |
23870461 |
T |
|
| Q |
527 |
aaaaggttttttcattgggatttccttgagaaattcatcagaatctgggtttaacaaggaagtgattggagatttttcatgtatgatact |
616 |
Q |
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| T |
23870460 |
aaaaggttttttcattgggatttccttgagaaattcatcagaatctgggtttaacacggaagtgattggagatttttcatgtatgatact |
23870371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 23783985 - 23783776
Alignment:
| Q |
6 |
gggtagataattctgattagaatacacctggttgtgacttattttaaacaaatcacaaaaggaaaatatttattttgttttaatgaaagaaaatacttga |
105 |
Q |
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| T |
23783985 |
gggtaaatatttctgattagaatacacctggttgtgacttattttaaacaaatcacaaaaggaaaatatttattttgttttaatgaaagaaaatacttga |
23783886 |
T |
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| Q |
106 |
atcgctataatgtcgctcctnnnnnnnngaatcggtataatgtatatacaccattgctgatgatgaaaaccgatagagaagaaaaccactgacactgatc |
205 |
Q |
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| T |
23783885 |
atcgctataatgtcgctcctaaaaaaaagaatcggtataacgtatatacaccattgctgatgatgaaaaccgatagagaagaaaaccagtgacactgatc |
23783786 |
T |
|
| Q |
206 |
acaacaatag |
215 |
Q |
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|||||||||| |
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| T |
23783785 |
acaacaatag |
23783776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 23870938 - 23870729
Alignment:
| Q |
6 |
gggtagataattctgattagaatacacctggttgtgacttattttaaacaaatcacaaaaggaaaatatttattttgttttaatgaaagaaaatacttga |
105 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23870938 |
gggtaaatatttctgattagaatacacctggttgtgacttattttaaacaaatcacaaaaggaaaatatttattttgttttaatgaaagaaaatacttga |
23870839 |
T |
|
| Q |
106 |
atcgctataatgtcgctcctnnnnnnnngaatcggtataatgtatatacaccattgctgatgatgaaaaccgatagagaagaaaaccactgacactgatc |
205 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23870838 |
atcgctataatgtcgctcctaaaaaaaagaatcggtataacgtatatacaccattgctgatgatgaaaaccgatagagaagaaaaccagtgacactgatc |
23870739 |
T |
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| Q |
206 |
acaacaatag |
215 |
Q |
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|||||||||| |
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| T |
23870738 |
acaacaatag |
23870729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 305
Target Start/End: Complemental strand, 23783722 - 23783691
Alignment:
| Q |
274 |
gttgttctaaaattattatttgtatgttaaag |
305 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23783722 |
gttgttctaaaattattatttgtatgttaaag |
23783691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 305
Target Start/End: Complemental strand, 23870675 - 23870644
Alignment:
| Q |
274 |
gttgttctaaaattattatttgtatgttaaag |
305 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23870675 |
gttgttctaaaattattatttgtatgttaaag |
23870644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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