View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19291_low_5 (Length: 461)
Name: NF19291_low_5
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 33086980 - 33087404
Alignment:
| Q |
16 |
atagagagtgcgagaaataaataaggtggaaaaagaaggagtctctcaacaatacacgcacaacataagataagttggatttttaccacacataagactc |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33086980 |
atagagaatgcgagaaataaataaggtggaaaaagaagaagtctctcaacaatacac--acaacataagataagttggatttttaccacacataagactc |
33087077 |
T |
|
| Q |
116 |
atgaagtgtgtatgaattgggatatagtgacaaatgatatggagaaaattaaacttcgagtctcacatttattaattgataaggctttaaagagtttata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33087078 |
atgaagtgtgtatgaattgggatatagtgacaaatgatatggagaaaa----acttcgagtctcacatttattaattgataaggcttgaaagagtttata |
33087173 |
T |
|
| Q |
216 |
tggagtgacactcatcatattacaaatcaattttttatggatgagttaaactcactataaaaactttgagagatctaccatttaaaagtttgatcatctc |
315 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33087174 |
tggagtgacactcatcatattataaatcaattttttatggatgagttaaactcactataaaaactttgagagatctaccatttaaaagtttgatcatctc |
33087273 |
T |
|
| Q |
316 |
ttgatgcttttatccaacctcttc-ttaagaggtcatttctcttctccaccactttggttggagaacctcattctacaaggctaatcgatgtcctgactt |
414 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33087274 |
ttgatgcttttatccaacctcttctttaagaggtcatttctcttctccaccactttggttggagaacctcattctacaaggctaatcgatgtcctgactt |
33087373 |
T |
|
| Q |
415 |
gctattctagctaattttttagttgtataat |
445 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
33087374 |
gctatgctagctaattttttagttgtataat |
33087404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University