View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_6 (Length: 460)
Name: NF19291_low_6
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 29341695 - 29342140
Alignment:
| Q |
1 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341695 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
29341794 |
T |
|
| Q |
101 |
ttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341795 |
ttttgagagaccctttgatgatcactttactcgtagatggaatttagcaagcaatgaaaatattgcacatgtggtagtgttgaagcacattactattgaa |
29341894 |
T |
|
| Q |
201 |
atgcttgacacctttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcctccatgtattgcaagcgacgttggttcta |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
29341895 |
atgcttgacacctttgttcatgaatttatccaaaaacgatcgatttggtctaaagatggacactttcaacctccatgtattgcaagcgacgttggttcta |
29341994 |
T |
|
| Q |
301 |
gaaattgtgcttgttctatacacagcttatcaagaaattattagctagaatatatgtgatgttaatttaat-attggctcaattattgggtcattggtta |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||| |||||||| |
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| T |
29341995 |
aaaattgtgcttgttctatacacagcttatcaagaaattattagctagaatatatgtgattttaatttaataattggctcaatt-tttggttattggtta |
29342093 |
T |
|
| Q |
400 |
catatcctattctttgttcaacatttatttattttcaaatagttact |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29342094 |
catatcctattctttgttcaacatttatttatttttaaatagttact |
29342140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 29357722 - 29358134
Alignment:
| Q |
1 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357722 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
29357821 |
T |
|
| Q |
101 |
ttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357822 |
ttttgagagaccctttgatgatcactttactcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaa |
29357921 |
T |
|
| Q |
201 |
atgcttgacacctttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcctccatgtattgcaagcgacgttggttcta |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29357922 |
atgcttgacacctttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcttccatgtattgcaagcgacgttggttcta |
29358021 |
T |
|
| Q |
301 |
gaaattgtgcttgttctatacacagcttatcaagaaattattagctagaatatatgtgatgttaatttaatattggctcaattattgggtcattggttac |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
29358022 |
gaaattgtgcttgttcgatacacagcttatcaagaaattattagctagaatatatgtgatgttaatttaatattggctcaa-tattgggttattggttac |
29358120 |
T |
|
| Q |
401 |
atatcctattcttt |
414 |
Q |
| |
|
||||| |||||||| |
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|
| T |
29358121 |
atatcttattcttt |
29358134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 44660080 - 44659728
Alignment:
| Q |
9 |
catgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgaga |
108 |
Q |
| |
|
|||||||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||| |
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|
| T |
44660080 |
catgaatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacaaatttagcaacatagttgtgtttgaga |
44659981 |
T |
|
| Q |
109 |
gaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttga |
208 |
Q |
| |
|
||||| | ||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||| || |
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|
| T |
44659980 |
gacccctggatgatcactttactcgtagatggaatttggcaagcaacaaaaatactgcacatgtggtagtgttgaagcacgttactgttgaaatgctcga |
44659881 |
T |
|
| Q |
209 |
cacctttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcctccatgtattgcaagcgacgttggttctagaaattgt |
308 |
Q |
| |
|
| | ||||| ||||||||| |||||| ||| ||||||| |||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||| |
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|
| T |
44659880 |
ctcatttgtccgtgaatttactgaaaaacaatccatttggtataaagatgaacaatttcagcctccatgcattgcgaacgacgttggttctagaaattgt |
44659781 |
T |
|
| Q |
309 |
gcttgttctatacacagcttatcaagaaattattagctagaatatatgtgatg |
361 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||| ||||||| ||| || |||||| |
|
|
| T |
44659780 |
gcttgttccatacacaacttatcgagaaattgttagctaaaatttaagtgatg |
44659728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 44683225 - 44682919
Alignment:
| Q |
9 |
catgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgaga |
108 |
Q |
| |
|
|||||||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
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|
| T |
44683225 |
catgaatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgaga |
44683126 |
T |
|
| Q |
109 |
gaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttga |
208 |
Q |
| |
|
| ||| | |||||| |||| |||||||| |||||||| ||| ||| ||| ||||||||||||||||||||||| | || || || |||||||| | || |
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|
| T |
44683125 |
ggcccctcgatgatgacttcaatcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttgga |
44683026 |
T |
|
| Q |
209 |
cacctttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcctccatgtattgcaagcgacgttggttctagaaattgt |
308 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| |||||||| ||||||| ||||||| |||||| ||| ||||||| || |||||||| | ||||||| |
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|
| T |
44683025 |
cacctttgttcatgaatttattgaaaaacgatccatttggtcaaaagatgaacaatttaagcctctatgcattgcaaatgatgttggttccaaaaattgt |
44682926 |
T |
|
| Q |
309 |
gcttgtt |
315 |
Q |
| |
|
||||||| |
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|
| T |
44682925 |
gcttgtt |
44682919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 44640248 - 44640141
Alignment:
| Q |
1 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
100 |
Q |
| |
|
||||||| ||| ||||||| | ||||||||||||||| | | | |||| |||||||||||||||||| |||||||||| || |||||||||| |||||| |
|
|
| T |
44640248 |
atgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttgt |
44640149 |
T |
|
| Q |
101 |
ttttgaga |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
44640148 |
ttttgaga |
44640141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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