View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19291_low_7 (Length: 430)

Name: NF19291_low_7
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19291_low_7
NF19291_low_7
[»] scaffold0115 (1 HSPs)
scaffold0115 (127-414)||(42366-42653)
[»] chr7 (1 HSPs)
chr7 (1-159)||(279911-280068)
[»] scaffold0065 (1 HSPs)
scaffold0065 (176-324)||(62812-62962)
[»] chr3 (2 HSPs)
chr3 (64-159)||(10499066-10499161)
chr3 (127-159)||(49452959-49452991)
[»] chr8 (8 HSPs)
chr8 (93-163)||(24351681-24351751)
chr8 (95-162)||(1157114-1157181)
chr8 (64-164)||(968386-968486)
chr8 (127-159)||(1100584-1100616)
chr8 (99-159)||(3624639-3624698)
chr8 (127-159)||(27979244-27979276)
chr8 (127-159)||(28036513-28036545)
chr8 (93-157)||(34986150-34986214)
[»] chr5 (2 HSPs)
chr5 (64-159)||(29075805-29075900)
chr5 (92-151)||(43241647-43241706)
[»] chr1 (3 HSPs)
chr1 (60-159)||(12587290-12587388)
chr1 (126-159)||(1094611-1094644)
chr1 (127-159)||(25494026-25494058)
[»] chr4 (4 HSPs)
chr4 (126-159)||(40283943-40283976)
chr4 (127-159)||(13483101-13483133)
chr4 (127-159)||(18525447-18525479)
chr4 (126-162)||(34075593-34075629)
[»] chr2 (1 HSPs)
chr2 (126-159)||(25637237-25637270)
[»] chr6 (1 HSPs)
chr6 (126-158)||(24641148-24641180)


Alignment Details
Target: scaffold0115 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 127 - 414
Target Start/End: Complemental strand, 42653 - 42366
Alignment:
Q  127 caatttagatgggctaatttaacttcttcaaaataactaacaatatggtttaagataaagaaaaatggttgaatcagttttgatactattattgttgcaa 226  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42653 caatttaggtgggctaatttaacttcttcaaaataactaacaatatggtttaagataaagaaaaatggttgaatcagttttgatactattattgttgcaa 42554  T
Q  227 gattttagaaaagagtgaaaggaacacatttgcatcaaaacaatcctagaaattattatttaacatgaaaaatatatttcatcatttaagttccacaaga 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42553 gattttagaaaagagtgaaaggaacacatttgcatcaaaacaatcctagaaattattatttaacatgaaaaatatatttcatcatttaagtttcacaaga 42454  T
Q  327 ctcaagagataagaaaactctattcctcacctatcaatcgttgcatgaagaattgtttgagaaaaatttaaacgaaacaaccgctaag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42453 ctcaagagataagaaaactctattcctcacctatcaatcgttgcatgaagaattgtttgagaaaaatttaaacgaaacaaccgctaag 42366  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 280068 - 279911
Alignment:
Q  1 ccaactaaacgaatcatcaatggtgagcattcaagtgttgataaaaacattcatttgacgtgatattggcttgggttctgggatgttgcttttccttgag 100  Q
    ||||||||||||  ||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||   | ||  ||||| ||    
T  280068 ccaactaaacgatgcattaagggtgagcattcaagtgttgataataacattcatgtgacgtgatattggcttgggat-tgggagtgtactcctccttaag 279970  T
Q  101 gtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaaaa 159  Q
    ||||||||||||| ||||| |||  ||||||| | |||||||||||| |||||| ||||    
T  279969 gtctcaggttcaattctctccggtgccaatttgggtgggctaatttagcttcttaaaaa 279911  T

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Target: scaffold0065 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 324
Target Start/End: Complemental strand, 62962 - 62812
Alignment:
Q  176 ttaagataaagaaaaatggttgaatcagttttgatac---tattattgttgcaagattttagaaaagagtgaaaggaacacatttgcatcaaaacaatcc 272  Q
    ||||||| ||||||||||| ||||| | ||| ||||    ||||||| |||| |||||||| |||||| |||||| |||||||||| || ||||| |||     
T  62962 ttaagattaagaaaaatggatgaatgattttagataaaattattattattgccagattttacaaaagaatgaaagaaacacatttgaattaaaacgatct 62863  T
Q  273 tagaaattattatttaacatgaaaaatatatttcatcatttaagttccacaa 324  Q
    ||||  ||||||||||||||||||||||| ||| ||||||| |||| |||||    
T  62862 tagag-ttattatttaacatgaaaaatattttttatcatttgagtttcacaa 62812  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 10499161 - 10499066
Alignment:
Q  64 tattggcttgggttctgggatgttgcttttccttgaggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaaaa 159  Q
    |||||||||||| |||||||   |||| |||||||||||||||||||| | ||||| ||    |||||| | |||||||||||| |||||||||||    
T  10499161 tattggcttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctccgatgtcaatttgggtgggctaatttagcttcttcaaaa 10499066  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 49452959 - 49452991
Alignment:
Q  127 caatttagatgggctaatttaacttcttcaaaa 159  Q
    |||||| ||||||||||||||||||||||||||    
T  49452959 caatttggatgggctaatttaacttcttcaaaa 49452991  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 24351751 - 24351681
Alignment:
Q  93 tccttgaggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaaaataac 163  Q
    |||||||||||||| |||||| ||||| |||   |||||| |||| ||||||||| |||||||||||||||    
T  24351751 tccttgaggtctcaagttcaattctcttcggtatcaatttggatgagctaatttagcttcttcaaaataac 24351681  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 1157114 - 1157181
Alignment:
Q  95 cttgaggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaaaataa 162  Q
    ||||| |||||| |||||| ||||| ||   ||||||| |||| ||||||||||||||||||||||||    
T  1157114 cttgatgtctcaagttcaattctctccgataccaatttggatgagctaatttaacttcttcaaaataa 1157181  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 968386 - 968486
Alignment:
Q  64 tattggcttgggttctgggatgttgcttttccttgaggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaaaataac 163  Q
    ||||||||||||  ||||||   ||||  |||| |||||||||||||| | ||||| ||   ||||||||| |||||||||||| |||||| |||| |||    
T  968386 tattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaatttagcttcttaaaaaaaac 968485  T
Q  164 t 164  Q
    |    
T  968486 t 968486  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 1100584 - 1100616
Alignment:
Q  127 caatttagatgggctaatttaacttcttcaaaa 159  Q
    ||||||||||||||||||||| |||||||||||    
T  1100584 caatttagatgggctaatttagcttcttcaaaa 1100616  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 3624639 - 3624698
Alignment:
Q  99 aggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaaaa 159  Q
    ||||||||||||| | ||||| |||||| ||||||| |||||||||||| ||| |||||||    
T  3624639 aggtctcaggttcgattctctccgggtc-aatttaggtgggctaatttagctttttcaaaa 3624698  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 27979244 - 27979276
Alignment:
Q  127 caatttagatgggctaatttaacttcttcaaaa 159  Q
    |||||| ||||||||||||||||||||||||||    
T  27979244 caatttggatgggctaatttaacttcttcaaaa 27979276  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 28036513 - 28036545
Alignment:
Q  127 caatttagatgggctaatttaacttcttcaaaa 159  Q
    |||||| ||||||||||||||||||||||||||    
T  28036513 caatttggatgggctaatttaacttcttcaaaa 28036545  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 34986150 - 34986214
Alignment:
Q  93 tccttgaggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaa 157  Q
    ||||||||||||||||||||| ||||| | |   |||||||  | ||||||||||||||||||||    
T  34986150 tccttgaggtctcaggttcaattctctccagtatcaatttaatttggctaatttaacttcttcaa 34986214  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 29075805 - 29075900
Alignment:
Q  64 tattggcttgggttctgggatgttgcttttccttgaggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaaaa 159  Q
    |||||||||||| |||||||   ||||  |||| ||| ||||| |||| | |||||  ||  |||||||||||||||||||||| |||||||||||    
T  29075805 tattggcttgggatctgggagtgtgctcctcctcgagatctcatgttcgattctctctggtgccaatttagatgggctaatttagcttcttcaaaa 29075900  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 43241706 - 43241647
Alignment:
Q  92 ttccttgaggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaactt 151  Q
    |||||||||||||||||||||| ||||| ||   ||||||||| ||| ||||||||||||    
T  43241706 ttccttgaggtctcaggttcaattctcttcgatgccaatttagctggactaatttaactt 43241647  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 12587290 - 12587388
Alignment:
Q  60 gtgatattggcttgggttctgggatgttgcttttccttgaggtctcaggttcaagtctctacgggtccaatttagatgggctaatttaacttcttcaaaa 159  Q
    ||||||||| |||||| |||| ||   ||||  |||| |||||||||||||| | ||||| ||| | |||||||| |||||||||||| |||||||||||    
T  12587290 gtgatattgacttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgattctctccgg-tgcaatttaggtgggctaatttagcttcttcaaaa 12587388  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 1094611 - 1094644
Alignment:
Q  126 ccaatttagatgggctaatttaacttcttcaaaa 159  Q
    ||||||||| ||||||||||||||||||||||||    
T  1094611 ccaatttaggtgggctaatttaacttcttcaaaa 1094644  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 25494058 - 25494026
Alignment:
Q  127 caatttagatgggctaatttaacttcttcaaaa 159  Q
    |||||||||||||||||||||||||||| ||||    
T  25494058 caatttagatgggctaatttaacttcttaaaaa 25494026  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 40283976 - 40283943
Alignment:
Q  126 ccaatttagatgggctaatttaacttcttcaaaa 159  Q
    ||||||||| ||||||||||||||||||||||||    
T  40283976 ccaatttaggtgggctaatttaacttcttcaaaa 40283943  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 13483101 - 13483133
Alignment:
Q  127 caatttagatgggctaatttaacttcttcaaaa 159  Q
    |||||||| ||||||||||||||||||||||||    
T  13483101 caatttaggtgggctaatttaacttcttcaaaa 13483133  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 18525447 - 18525479
Alignment:
Q  127 caatttagatgggctaatttaacttcttcaaaa 159  Q
    |||||||||||| ||||||||||||||||||||    
T  18525447 caatttagatggactaatttaacttcttcaaaa 18525479  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 34075593 - 34075629
Alignment:
Q  126 ccaatttagatgggctaatttaacttcttcaaaataa 162  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  34075593 ccaatttagatggactaatttagcttcttcaaaataa 34075629  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 25637237 - 25637270
Alignment:
Q  126 ccaatttagatgggctaatttaacttcttcaaaa 159  Q
    ||||||||| ||||||||||||||||||||||||    
T  25637237 ccaatttaggtgggctaatttaacttcttcaaaa 25637270  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 24641180 - 24641148
Alignment:
Q  126 ccaatttagatgggctaatttaacttcttcaaa 158  Q
    ||||||||| |||||||||||||||||||||||    
T  24641180 ccaatttaggtgggctaatttaacttcttcaaa 24641148  T

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